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VCF output is not compatible with current version of PySAM

Status: Open.

#73 In bcgsc/straglr;

· davidlougheed opened on Aug 19, 2025

Support for alternate chromosome names?

Status: Open.

#70 In bcgsc/straglr;

· skpeterson opened on Jun 5, 2025

Clarification on VCF Output

Status: Open.

#69 In bcgsc/straglr;

· HLHsieh opened on May 19, 2025

Determine the first and last reference base included in the STR call

Status: Open.

#68 In bcgsc/straglr;

· ljohansson opened on Apr 15, 2025

Expectation of no. of allele in a loci

Status: Open.

#67 In bcgsc/straglr;

· NabilAsyraf98 opened on Apr 9, 2025

bed file

Status: Open.

#66 In bcgsc/straglr;

· bioinfomatio opened on Apr 8, 2025

--max_str_len and --max_cov are not working

Status: Open.

#65 In bcgsc/straglr;

· xbwdk opened on Apr 8, 2025

inconsistent repeat unit for targeted locus genotyping?

Status: Open.

#63 In bcgsc/straglr;

· h-orias opened on Mar 19, 2025

can't limit to specific chromosome?

Status: Open.

#62 In bcgsc/straglr;

· h-orias opened on Jan 29, 2025

Missed RepeatExpansion calls

Status: Open.

#61 In bcgsc/straglr;

· leonschuetz opened on Jan 29, 2025

Can straglr benchmark HG002?

Status: Open.

#57 In bcgsc/straglr;

· HongyuanChu opened on Dec 26, 2024

Expanded allele not detected

Status: Open.

#56 In bcgsc/straglr;

· stfacc opened on Nov 25, 2024