Skip to content

Commit

Permalink
Add error checking in Bloom filter
Browse files Browse the repository at this point in the history
  • Loading branch information
schutzekatze committed Jan 22, 2021
1 parent a190bc3 commit f8d918e
Show file tree
Hide file tree
Showing 132 changed files with 7,844 additions and 8,619 deletions.
6 changes: 4 additions & 2 deletions Doxyfile
View file
Original file line number Diff line number Diff line change
Expand Up @@ -934,7 +934,8 @@ RECURSIVE = YES
# run.

EXCLUDE = include/btllib/index_queue.hpp \
include/btllib/data_stream.hpp
include/btllib/data_stream.hpp \
include/btllib/cstring.hpp

# The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
# directories that are symbolic links (a Unix file system feature) are excluded
Expand All @@ -961,7 +962,8 @@ EXCLUDE_PATTERNS =
# Note that the wildcards are matched against the file with absolute path, so to
# exclude all test directories use the pattern */test/*

EXCLUDE_SYMBOLS = btllib::SeqReader::read_*
EXCLUDE_SYMBOLS = btllib::SeqReader::read_* \
btllib::Indexlr::Read

# The EXAMPLE_PATH tag can be used to specify one or more files or directories
# that contain example code fragments that are included (see the \include
Expand Down
44 changes: 21 additions & 23 deletions docs/annotated.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.8.20"/>
<meta name="generator" content="Doxygen 1.9.1"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>btllib: Class List</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
Expand All @@ -29,10 +29,10 @@
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.8.20 -->
<!-- Generated by Doxygen 1.9.1 -->
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
var searchBox = new SearchBox("searchBox", "search",false,'Search');
var searchBox = new SearchBox("searchBox", "search",false,'Search','.html');
/* @license-end */
</script>
<script type="text/javascript" src="menudata.js"></script>
Expand Down Expand Up @@ -69,31 +69,29 @@
<div class="levels">[detail level <span onclick="javascript:toggleLevel(1);">1</span><span onclick="javascript:toggleLevel(2);">2</span><span onclick="javascript:toggleLevel(3);">3</span>]</div><table class="directory">
<tr id="row_0_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_0_" class="arrow" onclick="toggleFolder('0_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><b>btllib</b></td><td class="desc"></td></tr>
<tr id="row_0_0_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classbtllib_1_1BloomFilter.html" target="_self">BloomFilter</a></td><td class="desc"></td></tr>
<tr id="row_0_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classbtllib_1_1CountingBloomFilter.html" target="_self">CountingBloomFilter</a></td><td class="desc"></td></tr>
<tr id="row_0_2_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbtllib_1_1CString.html" target="_self">CString</a></td><td class="desc"></td></tr>
<tr id="row_0_3_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_3_" class="arrow" onclick="toggleFolder('0_3_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classbtllib_1_1Indexlr.html" target="_self">Indexlr</a></td><td class="desc"></td></tr>
<tr id="row_0_3_0_"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbtllib_1_1Indexlr_1_1Flag.html" target="_self">Flag</a></td><td class="desc"></td></tr>
<tr id="row_0_3_1_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbtllib_1_1Indexlr_1_1Minimizer.html" target="_self">Minimizer</a></td><td class="desc"></td></tr>
<tr id="row_0_3_2_"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbtllib_1_1Indexlr_1_1Read.html" target="_self">Read</a></td><td class="desc"></td></tr>
<tr id="row_0_3_3_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbtllib_1_1Indexlr_1_1Record.html" target="_self">Record</a></td><td class="desc"></td></tr>
<tr id="row_0_4_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classbtllib_1_1KmerBloomFilter.html" target="_self">KmerBloomFilter</a></td><td class="desc"></td></tr>
<tr id="row_0_5_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classbtllib_1_1KmerCountingBloomFilter.html" target="_self">KmerCountingBloomFilter</a></td><td class="desc"></td></tr>
<tr id="row_0_6_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classbtllib_1_1NtHash.html" target="_self">NtHash</a></td><td class="desc"></td></tr>
<tr id="row_0_7_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_7_" class="arrow" onclick="toggleFolder('0_7_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classbtllib_1_1OrderQueue.html" target="_self">OrderQueue</a></td><td class="desc"></td></tr>
<tr id="row_0_7_0_"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbtllib_1_1OrderQueue_1_1Block.html" target="_self">Block</a></td><td class="desc"></td></tr>
<tr id="row_0_7_1_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbtllib_1_1OrderQueue_1_1Slot.html" target="_self">Slot</a></td><td class="desc"></td></tr>
<tr id="row_0_8_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classbtllib_1_1SeedBloomFilter.html" target="_self">SeedBloomFilter</a></td><td class="desc"></td></tr>
<tr id="row_0_9_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classbtllib_1_1SeedNtHash.html" target="_self">SeedNtHash</a></td><td class="desc"></td></tr>
<tr id="row_0_10_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_10_" class="arrow" onclick="toggleFolder('0_10_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classbtllib_1_1SeqReader.html" target="_self">SeqReader</a></td><td class="desc"></td></tr>
<tr id="row_0_10_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbtllib_1_1SeqReader_1_1Flag.html" target="_self">Flag</a></td><td class="desc"></td></tr>
<tr id="row_0_10_1_"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbtllib_1_1SeqReader_1_1Record.html" target="_self">Record</a></td><td class="desc"></td></tr>
<tr id="row_0_11_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classbtllib_1_1SeqWriter.html" target="_self">SeqWriter</a></td><td class="desc"></td></tr>
<tr id="row_0_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classbtllib_1_1KmerBloomFilter.html" target="_self">KmerBloomFilter</a></td><td class="desc"></td></tr>
<tr id="row_0_2_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classbtllib_1_1SeedBloomFilter.html" target="_self">SeedBloomFilter</a></td><td class="desc"></td></tr>
<tr id="row_0_3_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classbtllib_1_1KmerCountingBloomFilter.html" target="_self">KmerCountingBloomFilter</a></td><td class="desc"></td></tr>
<tr id="row_0_4_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classbtllib_1_1CountingBloomFilter.html" target="_self">CountingBloomFilter</a></td><td class="desc"></td></tr>
<tr id="row_0_5_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_5_" class="arrow" onclick="toggleFolder('0_5_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classbtllib_1_1Indexlr.html" target="_self">Indexlr</a></td><td class="desc"></td></tr>
<tr id="row_0_5_0_"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbtllib_1_1Indexlr_1_1Flag.html" target="_self">Flag</a></td><td class="desc"></td></tr>
<tr id="row_0_5_1_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbtllib_1_1Indexlr_1_1Minimizer.html" target="_self">Minimizer</a></td><td class="desc"></td></tr>
<tr id="row_0_5_2_"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbtllib_1_1Indexlr_1_1Record.html" target="_self">Record</a></td><td class="desc"></td></tr>
<tr id="row_0_6_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classbtllib_1_1NtHash.html" target="_self">NtHash</a></td><td class="desc"></td></tr>
<tr id="row_0_7_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classbtllib_1_1SeedNtHash.html" target="_self">SeedNtHash</a></td><td class="desc"></td></tr>
<tr id="row_0_8_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_8_" class="arrow" onclick="toggleFolder('0_8_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classbtllib_1_1OrderQueue.html" target="_self">OrderQueue</a></td><td class="desc"></td></tr>
<tr id="row_0_8_0_"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbtllib_1_1OrderQueue_1_1Block.html" target="_self">Block</a></td><td class="desc"></td></tr>
<tr id="row_0_8_1_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbtllib_1_1OrderQueue_1_1Slot.html" target="_self">Slot</a></td><td class="desc"></td></tr>
<tr id="row_0_9_"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_9_" class="arrow" onclick="toggleFolder('0_9_')">&#9660;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classbtllib_1_1SeqReader.html" target="_self">SeqReader</a></td><td class="desc"></td></tr>
<tr id="row_0_9_0_" class="even"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbtllib_1_1SeqReader_1_1Flag.html" target="_self">Flag</a></td><td class="desc"></td></tr>
<tr id="row_0_9_1_"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structbtllib_1_1SeqReader_1_1Record.html" target="_self">Record</a></td><td class="desc"></td></tr>
<tr id="row_0_10_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classbtllib_1_1SeqWriter.html" target="_self">SeqWriter</a></td><td class="desc"></td></tr>
</table>
</div><!-- directory -->
</div><!-- contents -->
<!-- start footer part -->
<hr class="footer"/><address class="footer"><small>
Generated by&#160;<a href="http://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.8.20
Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.1
</small></address>
</body>
</html>
Loading

0 comments on commit f8d918e

Please sign in to comment.