-
Notifications
You must be signed in to change notification settings - Fork 6
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Showing
15 changed files
with
484 additions
and
69 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,98 @@ | ||
| <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> | ||
| <html xmlns="http://www.w3.org/1999/xhtml" lang="en-US"> | ||
| <head> | ||
| <meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/> | ||
| <meta http-equiv="X-UA-Compatible" content="IE=11"/> | ||
| <meta name="generator" content="Doxygen 1.9.5"/> | ||
| <meta name="viewport" content="width=device-width, initial-scale=1"/> | ||
| <title>btllib: Member List</title> | ||
| <link href="tabs.css" rel="stylesheet" type="text/css"/> | ||
| <script type="text/javascript" src="jquery.js"></script> | ||
| <script type="text/javascript" src="dynsections.js"></script> | ||
| <link href="search/search.css" rel="stylesheet" type="text/css"/> | ||
| <script type="text/javascript" src="search/searchdata.js"></script> | ||
| <script type="text/javascript" src="search/search.js"></script> | ||
| <link href="doxygen.css" rel="stylesheet" type="text/css" /> | ||
| </head> | ||
| <body> | ||
| <div id="top"><!-- do not remove this div, it is closed by doxygen! --> | ||
| <div id="titlearea"> | ||
| <table cellspacing="0" cellpadding="0"> | ||
| <tbody> | ||
| <tr id="projectrow"> | ||
| <td id="projectalign"> | ||
| <div id="projectname">btllib | ||
| </div> | ||
| </td> | ||
| </tr> | ||
| </tbody> | ||
| </table> | ||
| </div> | ||
| <!-- end header part --> | ||
| <!-- Generated by Doxygen 1.9.5 --> | ||
| <script type="text/javascript"> | ||
| /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&dn=expat.txt MIT */ | ||
| var searchBox = new SearchBox("searchBox", "search/",'.html'); | ||
| /* @license-end */ | ||
| </script> | ||
| <script type="text/javascript" src="menudata.js"></script> | ||
| <script type="text/javascript" src="menu.js"></script> | ||
| <script type="text/javascript"> | ||
| /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&dn=expat.txt MIT */ | ||
| $(function() { | ||
| initMenu('',true,false,'search.php','Search'); | ||
| $(document).ready(function() { init_search(); }); | ||
| }); | ||
| /* @license-end */ | ||
| </script> | ||
| <div id="main-nav"></div> | ||
| <!-- window showing the filter options --> | ||
| <div id="MSearchSelectWindow" | ||
| onmouseover="return searchBox.OnSearchSelectShow()" | ||
| onmouseout="return searchBox.OnSearchSelectHide()" | ||
| onkeydown="return searchBox.OnSearchSelectKey(event)"> | ||
| </div> | ||
|
|
||
| <!-- iframe showing the search results (closed by default) --> | ||
| <div id="MSearchResultsWindow"> | ||
| <div id="MSearchResults"> | ||
| <div class="SRPage"> | ||
| <div id="SRIndex"> | ||
| <div id="SRResults"></div> | ||
| <div class="SRStatus" id="Loading">Loading...</div> | ||
| <div class="SRStatus" id="Searching">Searching...</div> | ||
| <div class="SRStatus" id="NoMatches">No Matches</div> | ||
| </div> | ||
| </div> | ||
| </div> | ||
| </div> | ||
|
|
||
| <div id="nav-path" class="navpath"> | ||
| <ul> | ||
| <li class="navelem"><a class="el" href="namespacebtllib.html">btllib</a></li><li class="navelem"><a class="el" href="classbtllib_1_1RandomSequenceGenerator.html">RandomSequenceGenerator</a></li> </ul> | ||
| </div> | ||
| </div><!-- top --> | ||
| <div class="header"> | ||
| <div class="headertitle"><div class="title">btllib::RandomSequenceGenerator Member List</div></div> | ||
| </div><!--header--> | ||
| <div class="contents"> | ||
|
|
||
| <p>This is the complete list of members for <a class="el" href="classbtllib_1_1RandomSequenceGenerator.html">btllib::RandomSequenceGenerator</a>, including all inherited members.</p> | ||
| <table class="directory"> | ||
| <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>DNA</b> enum value (defined in <a class="el" href="classbtllib_1_1RandomSequenceGenerator.html">btllib::RandomSequenceGenerator</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1RandomSequenceGenerator.html">btllib::RandomSequenceGenerator</a></td><td class="entry"></td></tr> | ||
| <tr class="odd"><td class="entry"><a class="el" href="classbtllib_1_1RandomSequenceGenerator.html#a38515aaa3da32b71c866dfc58a3eac4b">generate</a>(size_t length)</td><td class="entry"><a class="el" href="classbtllib_1_1RandomSequenceGenerator.html">btllib::RandomSequenceGenerator</a></td><td class="entry"></td></tr> | ||
| <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>HARD</b> enum value (defined in <a class="el" href="classbtllib_1_1RandomSequenceGenerator.html">btllib::RandomSequenceGenerator</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1RandomSequenceGenerator.html">btllib::RandomSequenceGenerator</a></td><td class="entry"></td></tr> | ||
| <tr bgcolor="#f0f0f0" class="odd"><td class="entry"><b>Masking</b> enum name (defined in <a class="el" href="classbtllib_1_1RandomSequenceGenerator.html">btllib::RandomSequenceGenerator</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1RandomSequenceGenerator.html">btllib::RandomSequenceGenerator</a></td><td class="entry"></td></tr> | ||
| <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>NONE</b> enum value (defined in <a class="el" href="classbtllib_1_1RandomSequenceGenerator.html">btllib::RandomSequenceGenerator</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1RandomSequenceGenerator.html">btllib::RandomSequenceGenerator</a></td><td class="entry"></td></tr> | ||
| <tr bgcolor="#f0f0f0" class="odd"><td class="entry"><b>PROTEIN</b> enum value (defined in <a class="el" href="classbtllib_1_1RandomSequenceGenerator.html">btllib::RandomSequenceGenerator</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1RandomSequenceGenerator.html">btllib::RandomSequenceGenerator</a></td><td class="entry"></td></tr> | ||
| <tr class="even"><td class="entry"><a class="el" href="classbtllib_1_1RandomSequenceGenerator.html#a9dd080136218569ca55fd471b166c500">RandomSequenceGenerator</a>(SequenceType type, Masking masking=NONE)</td><td class="entry"><a class="el" href="classbtllib_1_1RandomSequenceGenerator.html">btllib::RandomSequenceGenerator</a></td><td class="entry"></td></tr> | ||
| <tr bgcolor="#f0f0f0" class="odd"><td class="entry"><b>RNA</b> enum value (defined in <a class="el" href="classbtllib_1_1RandomSequenceGenerator.html">btllib::RandomSequenceGenerator</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1RandomSequenceGenerator.html">btllib::RandomSequenceGenerator</a></td><td class="entry"></td></tr> | ||
| <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>SequenceType</b> enum name (defined in <a class="el" href="classbtllib_1_1RandomSequenceGenerator.html">btllib::RandomSequenceGenerator</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1RandomSequenceGenerator.html">btllib::RandomSequenceGenerator</a></td><td class="entry"></td></tr> | ||
| <tr bgcolor="#f0f0f0" class="odd"><td class="entry"><b>SOFT</b> enum value (defined in <a class="el" href="classbtllib_1_1RandomSequenceGenerator.html">btllib::RandomSequenceGenerator</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1RandomSequenceGenerator.html">btllib::RandomSequenceGenerator</a></td><td class="entry"></td></tr> | ||
| </table></div><!-- contents --> | ||
| <!-- start footer part --> | ||
| <hr class="footer"/><address class="footer"><small> | ||
| Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.5 | ||
| </small></address> | ||
| </body> | ||
| </html> |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,176 @@ | ||
| <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> | ||
| <html xmlns="http://www.w3.org/1999/xhtml" lang="en-US"> | ||
| <head> | ||
| <meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/> | ||
| <meta http-equiv="X-UA-Compatible" content="IE=11"/> | ||
| <meta name="generator" content="Doxygen 1.9.5"/> | ||
| <meta name="viewport" content="width=device-width, initial-scale=1"/> | ||
| <title>btllib: btllib::RandomSequenceGenerator Class Reference</title> | ||
| <link href="tabs.css" rel="stylesheet" type="text/css"/> | ||
| <script type="text/javascript" src="jquery.js"></script> | ||
| <script type="text/javascript" src="dynsections.js"></script> | ||
| <link href="search/search.css" rel="stylesheet" type="text/css"/> | ||
| <script type="text/javascript" src="search/searchdata.js"></script> | ||
| <script type="text/javascript" src="search/search.js"></script> | ||
| <link href="doxygen.css" rel="stylesheet" type="text/css" /> | ||
| </head> | ||
| <body> | ||
| <div id="top"><!-- do not remove this div, it is closed by doxygen! --> | ||
| <div id="titlearea"> | ||
| <table cellspacing="0" cellpadding="0"> | ||
| <tbody> | ||
| <tr id="projectrow"> | ||
| <td id="projectalign"> | ||
| <div id="projectname">btllib | ||
| </div> | ||
| </td> | ||
| </tr> | ||
| </tbody> | ||
| </table> | ||
| </div> | ||
| <!-- end header part --> | ||
| <!-- Generated by Doxygen 1.9.5 --> | ||
| <script type="text/javascript"> | ||
| /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&dn=expat.txt MIT */ | ||
| var searchBox = new SearchBox("searchBox", "search/",'.html'); | ||
| /* @license-end */ | ||
| </script> | ||
| <script type="text/javascript" src="menudata.js"></script> | ||
| <script type="text/javascript" src="menu.js"></script> | ||
| <script type="text/javascript"> | ||
| /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&dn=expat.txt MIT */ | ||
| $(function() { | ||
| initMenu('',true,false,'search.php','Search'); | ||
| $(document).ready(function() { init_search(); }); | ||
| }); | ||
| /* @license-end */ | ||
| </script> | ||
| <div id="main-nav"></div> | ||
| <!-- window showing the filter options --> | ||
| <div id="MSearchSelectWindow" | ||
| onmouseover="return searchBox.OnSearchSelectShow()" | ||
| onmouseout="return searchBox.OnSearchSelectHide()" | ||
| onkeydown="return searchBox.OnSearchSelectKey(event)"> | ||
| </div> | ||
|
|
||
| <!-- iframe showing the search results (closed by default) --> | ||
| <div id="MSearchResultsWindow"> | ||
| <div id="MSearchResults"> | ||
| <div class="SRPage"> | ||
| <div id="SRIndex"> | ||
| <div id="SRResults"></div> | ||
| <div class="SRStatus" id="Loading">Loading...</div> | ||
| <div class="SRStatus" id="Searching">Searching...</div> | ||
| <div class="SRStatus" id="NoMatches">No Matches</div> | ||
| </div> | ||
| </div> | ||
| </div> | ||
| </div> | ||
|
|
||
| <div id="nav-path" class="navpath"> | ||
| <ul> | ||
| <li class="navelem"><a class="el" href="namespacebtllib.html">btllib</a></li><li class="navelem"><a class="el" href="classbtllib_1_1RandomSequenceGenerator.html">RandomSequenceGenerator</a></li> </ul> | ||
| </div> | ||
| </div><!-- top --> | ||
| <div class="header"> | ||
| <div class="summary"> | ||
| <a href="#pub-types">Public Types</a> | | ||
| <a href="#pub-methods">Public Member Functions</a> | | ||
| <a href="classbtllib_1_1RandomSequenceGenerator-members.html">List of all members</a> </div> | ||
| <div class="headertitle"><div class="title">btllib::RandomSequenceGenerator Class Reference</div></div> | ||
| </div><!--header--> | ||
| <div class="contents"> | ||
| <table class="memberdecls"> | ||
| <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-types" name="pub-types"></a> | ||
| Public Types</h2></td></tr> | ||
| <tr class="memitem:a805a573a8cd5ae8a689d54cff804ff3e"><td class="memItemLeft" align="right" valign="top"><a id="a805a573a8cd5ae8a689d54cff804ff3e" name="a805a573a8cd5ae8a689d54cff804ff3e"></a>enum  </td><td class="memItemRight" valign="bottom"><b>SequenceType</b> { <b>DNA</b> | ||
| , <b>RNA</b> | ||
| , <b>PROTEIN</b> | ||
| }</td></tr> | ||
| <tr class="separator:a805a573a8cd5ae8a689d54cff804ff3e"><td class="memSeparator" colspan="2"> </td></tr> | ||
| <tr class="memitem:a6d9ea7d83f3f21f64ff79020dfc38538"><td class="memItemLeft" align="right" valign="top"><a id="a6d9ea7d83f3f21f64ff79020dfc38538" name="a6d9ea7d83f3f21f64ff79020dfc38538"></a>enum  </td><td class="memItemRight" valign="bottom"><b>Masking</b> { <b>NONE</b> | ||
| , <b>SOFT</b> | ||
| , <b>HARD</b> | ||
| }</td></tr> | ||
| <tr class="separator:a6d9ea7d83f3f21f64ff79020dfc38538"><td class="memSeparator" colspan="2"> </td></tr> | ||
| </table><table class="memberdecls"> | ||
| <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a> | ||
| Public Member Functions</h2></td></tr> | ||
| <tr class="memitem:a9dd080136218569ca55fd471b166c500"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classbtllib_1_1RandomSequenceGenerator.html#a9dd080136218569ca55fd471b166c500">RandomSequenceGenerator</a> (SequenceType type, Masking masking=NONE)</td></tr> | ||
| <tr class="separator:a9dd080136218569ca55fd471b166c500"><td class="memSeparator" colspan="2"> </td></tr> | ||
| <tr class="memitem:a38515aaa3da32b71c866dfc58a3eac4b"><td class="memItemLeft" align="right" valign="top">std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="classbtllib_1_1RandomSequenceGenerator.html#a38515aaa3da32b71c866dfc58a3eac4b">generate</a> (size_t length)</td></tr> | ||
| <tr class="separator:a38515aaa3da32b71c866dfc58a3eac4b"><td class="memSeparator" colspan="2"> </td></tr> | ||
| </table> | ||
| <h2 class="groupheader">Constructor & Destructor Documentation</h2> | ||
| <a id="a9dd080136218569ca55fd471b166c500" name="a9dd080136218569ca55fd471b166c500"></a> | ||
| <h2 class="memtitle"><span class="permalink"><a href="#a9dd080136218569ca55fd471b166c500">◆ </a></span>RandomSequenceGenerator()</h2> | ||
|
|
||
| <div class="memitem"> | ||
| <div class="memproto"> | ||
| <table class="memname"> | ||
| <tr> | ||
| <td class="memname">btllib::RandomSequenceGenerator::RandomSequenceGenerator </td> | ||
| <td>(</td> | ||
| <td class="paramtype">SequenceType </td> | ||
| <td class="paramname"><em>type</em>, </td> | ||
| </tr> | ||
| <tr> | ||
| <td class="paramkey"></td> | ||
| <td></td> | ||
| <td class="paramtype">Masking </td> | ||
| <td class="paramname"><em>masking</em> = <code>NONE</code> </td> | ||
| </tr> | ||
| <tr> | ||
| <td></td> | ||
| <td>)</td> | ||
| <td></td><td></td> | ||
| </tr> | ||
| </table> | ||
| </div><div class="memdoc"> | ||
| <p >Construct a random sequence generator object.</p> | ||
| <dl class="params"><dt>Parameters</dt><dd> | ||
| <table class="params"> | ||
| <tr><td class="paramname">type</td><td>Sequence type (DNA, RNA, or protein) </td></tr> | ||
| <tr><td class="paramname">masking</td><td>If set to SOFT, lower-case values will also be generated. If HARD, the sequences will include N/X positions. </td></tr> | ||
| </table> | ||
| </dd> | ||
| </dl> | ||
|
|
||
| </div> | ||
| </div> | ||
| <h2 class="groupheader">Member Function Documentation</h2> | ||
| <a id="a38515aaa3da32b71c866dfc58a3eac4b" name="a38515aaa3da32b71c866dfc58a3eac4b"></a> | ||
| <h2 class="memtitle"><span class="permalink"><a href="#a38515aaa3da32b71c866dfc58a3eac4b">◆ </a></span>generate()</h2> | ||
|
|
||
| <div class="memitem"> | ||
| <div class="memproto"> | ||
| <table class="memname"> | ||
| <tr> | ||
| <td class="memname">std::string btllib::RandomSequenceGenerator::generate </td> | ||
| <td>(</td> | ||
| <td class="paramtype">size_t </td> | ||
| <td class="paramname"><em>length</em></td><td>)</td> | ||
| <td></td> | ||
| </tr> | ||
| </table> | ||
| </div><div class="memdoc"> | ||
| <p >Generate a new random sequence.</p> | ||
| <dl class="params"><dt>Parameters</dt><dd> | ||
| <table class="params"> | ||
| <tr><td class="paramname">length</td><td>Sequence length </td></tr> | ||
| </table> | ||
| </dd> | ||
| </dl> | ||
|
|
||
| </div> | ||
| </div> | ||
| <hr/>The documentation for this class was generated from the following file:<ul> | ||
| <li>include/btllib/<a class="el" href="random__seq__generator_8hpp_source.html">random_seq_generator.hpp</a></li> | ||
| </ul> | ||
| </div><!-- contents --> | ||
| <!-- start footer part --> | ||
| <hr class="footer"/><address class="footer"><small> | ||
| Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.5 | ||
| </small></address> | ||
| </body> | ||
| </html> |
Oops, something went wrong.