HLAminer v1.4.1

This release incorporates all commits to main branch since the previous release (i.e., only to documentations, no code updates), and includes updated HLA sequence files; we encourage all users to update all HLA sequence databases before using HLAminer (see details in README).

HLAminer v1.4

-Ability to stream the (.sam) sequence alignment output of modern read aligners, directly into HLAminer.
-Initial support for predicting HLA types from long nanopore reads such as those from Oxford Nanopore Technologies and Pacific Biosciences.
-Better information/sub-routine/date tracking in HLAminer

HLAminer v1.3.1

-More concise HLA allele summary in HLAminer_HPTASR.csv and HLAminer_HPRA.csv (associated .log is unchanged and lists all predictions)
-Keeps top two [highest-scoring by HLA group] predictions per gene and only the 'P' designated allele when the summary include HLA Sequences reported to have the same antigen binding domain.
-For the original output, refer to the HLAminer_v1-2.pl included in the ./bin directory
-A prediction example from MCF-7 PacBio RNA-seq reads is also provided