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fenr 1.1.6

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@MarekGierlinski MarekGierlinski released this 11 Apr 09:32
· 13 commits to main since this release
  • Changed the Ensembl mapping file downloaded from Reactome to "Physical entity" mapping, as it contains gene symbols, in addition to the Ensembl IDs.
  • Changed the name of GAF column DB Object Synonym from gene_synonym to gene_id for consistency with other methods.
  • Changed Ensembl column ensembl_gene_id to gene_id for consistency.
  • Corrected Reactome test as it failed with multiple gene symbols per gene id.
  • Replaced biomaRt with a single RESTful XML call; as biomaRt is used only once to obtain GO terms, this replacement reduced dependency footprint of the package