Continuing issues with access to BioPlanet. fetch_bp example is now…

… marked `donotrun` and testing `fetch_bp` is removed to ensure smooth build and check even when BioPlanet server is down.
bartongroup · Jun 20, 2023 · 6fedac6 · 6fedac6
1 parent 16f5328
commit 6fedac6
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: fenr
 Title: Fast functional enrichment
-Version: 0.99.2
+Version: 0.99.3
 Authors@R: person(
     given = "Marek",
     family = "Gierlinski",

diff --git a/NEWS.md b/NEWS.md
@@ -82,3 +82,8 @@
 
  - BioPlanet's tripod.nih.gov SSL certificate seems to be fixed, so reversing to the original read_csv code.
 
+ ## Version 0.99.3
+
+ - Continuing issues with access to BioPlanet. `fetch_bp` example is now marked `donotrun` and testing `fetch_bp` is removed to ensure smooth build and check even when BioPlanet server is down.
+
+
diff --git a/R/bioplanet.R b/R/bioplanet.R
@@ -6,7 +6,9 @@
 #' @return A list with \code{terms} and \code{mapping} tibbles.
 #' @export
 #' @examples
+#' \dontrun{
 #' bioplanet_data <- fetch_bp()
+#' }
 fetch_bp <- function() {
   # Binding variables from non-standard evaluation locally
   PATHWAY_ID <- PATHWAY_NAME <- GENE_ID <- GENE_SYMBOL <- NULL

diff --git a/man/fetch_bp.Rd b/man/fetch_bp.Rd
diff --git a/tests/testthat/test_bp.R b/tests/testthat/test_bp.R
Original file line number	Diff line number	Diff line change
Expand Up		@@ -82,3 +82,8 @@

		- BioPlanet's tripod.nih.gov SSL certificate seems to be fixed, so reversing to the original read_csv code.

		## Version 0.99.3

		- Continuing issues with access to BioPlanet. `fetch_bp` example is now marked `donotrun` and testing `fetch_bp` is removed to ensure smooth build and check even when BioPlanet server is down.