miplicorn 0.2.1

• We now account for the UMI threshold when computing the frequency of
  mutations (#35).
• New read_tbl_genotype() function can be used to read in the
  genotypes_AA_table.csv and genotypes_AN_table.csv generated by MIPTools
  (#34).

miplicorn 0.2.0

Breaking changes

• Minimum R version has been bumped up to 3.4. This reflects the minimum version
  defined by package imports.
• Deprecate chromosome_map() in favor of plot_chromoMap() and
  plot_karyoploteR() (#25).

Read files

• The new read_tbl_*() family of functions provides a consistent function call
  to read data tables generated by MIPTools (#17).
• read_tbl_haplotype() can be used to read the haplotypes_count.csv file
  generated by MIPTools (#15).

New features

• New vignette("faq") answers some frequently asked questions (#32).
• New mutation_frequency() and plot_mutation_frequency() functions can be
  used to determine the frequency of mutations (#29).
• New mutation_prevalence() and plot_mutation_prevalence() functions can be
  used to determine the prevalence of mutations (#23).
• New label_mutations() labels a mutation as "ref", "alt", "ins", or
  "del" (#3).
• New theme_rainbow() creates a custom theme.

Minor improvements and bug fixes

• plot_karyoploteR() no longer prints plot noisily.
• read_tbl_*() functions no longer change sample IDs (#20).
• We now use {rlang} instead of {cli} to display messages, warnings, and
  errors (#16).
• plot_karyoploteR() now works for arbitrary column names (#14).

miplicorn 0.1.0

• chromosome_map() can now create an additional type of map (@arisp99, #12).
• New chromosome_map() creates a chromosome map annotated with probe
  locations.
• theme_miplicorn() specifies a custom theme for creating figures.
• read() now allows for filtering on multiple conditions (@arisp99, #7).
• New arrange_natural() naturally sorts a data frame (@arisp99, #6).
• New convert_single() and convert_three convert amino acid abbreviations
  (@arisp99, #4).
• Increase efficiency of read() (@arisp99, #2).
• Added a NEWS.md file to track changes to the package.