Fastq input hotfix #53

	name: Rust codecov

	on:
	push:
	branches: [ '*' ] # Run on all branches
	pull_request:
	branches: [ '*' ] # Run on PRs to all branches

	env:
	CARGO_TERM_COLOR: always

	jobs:
	build:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v3
	- uses: actions-rs/toolchain@v1
	with:
	toolchain: stable
	override: true
	components: llvm-tools-preview # Required for grcov

	- name: Build
	run: cargo build --verbose

	- name: Install cargo-llvm-cov and run tests
	run: cargo install cargo-llvm-cov && cargo llvm-cov --lcov --output-path=./lcov.info
	env:
	CARGO_INCREMENTAL: '0'
	RUSTFLAGS: '-Ccodegen-units=1 -Cinline-threshold=0 -Clink-dead-code -Coverflow-checks=off -Cinstrument-coverage'
	RUSTDOCFLAGS: '-Ccodegen-units=1 -Cinline-threshold=0 -Clink-dead-code -Coverflow-checks=off -Cinstrument-coverage'

	- name: Codecov
	# You may pin to the exact commit or the version.
	uses: codecov/[email protected]
	with:
	# Repository upload token - get it from codecov.io. Required only for private repositories
	token: ${{ secrets.CODECOV_TOKEN }}
	file: ./lcov.info
	# Specify whether the Codecov output should be verbose
	verbose: true
	fail_ci_if_error: true

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