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Fix contained build of vgp-tools. #1

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@davebx davebx commented Apr 26, 2021

Describe your pull request here


Please read the guidelines for Bioconda recipes before opening a pull request (PR).

  • If this PR adds or updates a recipe, use "Add" or "Update" appropriately as the first word in its title.
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astrovsky01 pushed a commit that referenced this pull request Aug 2, 2021
Merge PR bioconda#28665, commits were: 
 * Update version to 0.0.4
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request Aug 2, 2021
Merge PR bioconda#28663, commits were: 
 * Update version to 0.0.4
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request Aug 2, 2021
Merge PR bioconda#28664, commits were: 
 * Update version to 0.0.4
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request Aug 2, 2021
Merge PR bioconda#28908, commits were: 
 * Update meta.yaml
 * Merge branch 'pgcgap' of https://github.com/liaochenlanruo/bioconda-recipes into pgcgap
 * add pgcgap to the BtToxin_Digger repo
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update build-fail-blacklist
 * Update BtToxin_Digger to v1.0.9
 * Merge branch 'master' of https://github.com/liaochenlanruo/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'bioconda:master' into master
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request bioconda#3 from bioconda/master

Update local
 * Merge pull request #1 from bioconda/master

Update local
astrovsky01 pushed a commit that referenced this pull request Aug 2, 2021
Merge PR bioconda#28959, commits were: 
 * pin htslib to 1.11
 * pin htslib to 1.11
 * bump htslib version
 * update htslib version for shapeit4
 * Merge pull request #1 from carjed/patch-1

Update shapeit4 to v4.2.1
 * Update shapeit4 to v4.2.1

Recommended by developer to resolve `invalid pointer` error when using shapeit4 through conda (see odelaneau/shapeit4#54 (comment))
 * Bump to latest version (4.2.1)

Recommended by developer to resolve `invalid pointer` error odelaneau/shapeit4#54 (comment)
astrovsky01 pushed a commit that referenced this pull request Aug 2, 2021
Merge PR bioconda#29152, commits were: 
 * Update version to 0.0.5
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request Aug 2, 2021
Merge PR bioconda#29151, commits were: 
 * Update version to 0.0.5
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request Aug 2, 2021
Merge PR bioconda#29148, commits were: 
 * Update version to 0.0.5
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request Aug 2, 2021
Merge PR bioconda#29147, commits were: 
 * Update version to 0.0.6
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request Aug 2, 2021
Merge PR bioconda#29149, commits were: 
 * Update version to 0.0.5
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request Aug 2, 2021
Merge PR bioconda#29182, commits were: 
 * Update meta.yaml
 * md5 -> SHA256
 * Update meta.yaml
 * Merge branch 'bioconda:master' into master
 * Merge pull request bioconda#2 from bioconda/master

Get latest versions
 * Merge pull request #1 from bioconda/master

Get latest GATK recipe
astrovsky01 pushed a commit that referenced this pull request Aug 2, 2021
Merge PR bioconda#29242, commits were: 
 * Add font requirements
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge pull request bioconda#2 from bioconda/master

Get latest versions
 * Merge pull request #1 from bioconda/master

Get latest GATK recipe
astrovsky01 pushed a commit that referenced this pull request Aug 2, 2021
Merge PR bioconda#29396, commits were: 
 * Update version to 0.0.7
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request Aug 2, 2021
Merge PR bioconda#29501, commits were: 
 * Update tool version to 0.0.6
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request Aug 2, 2021
Merge PR bioconda#29546, commits were: 
 * Increase version to 0.0.7
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request Aug 2, 2021
Merge PR bioconda#29570, commits were: 
 * Update version to 0.0.6
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request Aug 2, 2021
Merge PR bioconda#29568, commits were: 
 * Update tool version to 0.0.6
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request Aug 2, 2021
Merge PR bioconda#29665, commits were: 
 * Update version
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request Aug 2, 2021
Merge PR bioconda#29575, commits were: 
 * Update meta.yaml

add the version number to each dependency
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Merge branch 'master' of https://github.com/liaochenlanruo/bioconda-recipes into pgcgap
 * Merge branch 'bioconda:master' into master
 * Update meta.yaml
 * Merge branch 'pgcgap' of https://github.com/liaochenlanruo/bioconda-recipes into pgcgap
 * add pgcgap to the BtToxin_Digger repo
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update build-fail-blacklist
 * Update BtToxin_Digger to v1.0.9
 * Merge branch 'master' of https://github.com/liaochenlanruo/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'bioconda:master' into master
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request bioconda#3 from bioconda/master

Update local
 * Merge pull request #1 from bioconda/master

Update local
astrovsky01 pushed a commit that referenced this pull request Apr 25, 2022
Merge PR bioconda#33979, commits were: 
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * See if ete3 is the issue
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * debug
 * Update meta.yaml
 * Update meta.yaml
 * Update recipes/deeparg/meta.yaml
 * Add deepARG recipe
 * Merge branch 'master' of github.com:jfy133/bioconda-recipes into master
 * Merge branch 'bioconda:master' into master
 * Add deepARG recipe
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge pull request bioconda#2 from bioconda/master

Get latest versions
 * Merge pull request #1 from bioconda/master

Get latest GATK recipe
astrovsky01 pushed a commit that referenced this pull request Apr 25, 2022
Merge PR bioconda#33600, commits were: 
 * Update meta.yaml
 * Merge branch 'master' into update_vsclust
 * Merge branch 'master' into update_vsclust
 * Merge branch 'master' into update_vsclust
 * fixed bioconductor
 * fixed bioconductor
 * Update build-fail-blacklist
 * Merge branch 'master' into update_vsclust
 * updated vsclust
 * update test
 * Merge branch 'update_vsclust' of github.com:veitveit/bioconda-recipes into update_vsclust
 * first test
 * Merge pull request #1 from veitveit/master

updating
 * first test
 * Merge branch 'master' into maxquant-patch-2
 * downgraded mono
 * changed to mono
 * changed to mono
 * changed to mono
 * corrected version
 * corrected version
 * Merge branch 'maxquant-patch-2' of https://github.com/veitveit/bioconda-recipes into maxquant-patch-2
 * Merge branch 'bioconda:master' into maxquant-patch-2
 * testing
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update maxquant dependency on dotnet

MaxQuant needs a newer version of dotnet. Probably due to a versioning problem with libssl (not sure).
astrovsky01 pushed a commit that referenced this pull request Apr 25, 2022
Merge PR bioconda#33780, commits were: 
 * Update pyopenms_cmakelist2.patch
 * Update meta.yaml
 * Merge pull request #1 from jpfeuffer/timosachsenberg-patch-1

add patch for hidden symbols
 * Update meta.yaml
 * add patch for hidden symbols
 * Update meta.yaml
 * Delete conda_build_config.yaml
 * Merge branch 'master' into pyopenms2_8_separate
 * Add pip..wow MacOS is really barebones
 * nop
 * Merge branch 'master' into pyopenms2_8_separate
 * add cmakelist patch to fix error in pyopenms 2.8 cmakelist
 * Merge branch 'bioconda:master' into pyopenms2_8_separate
 * Update meta.yaml
 * Add setuptools?
 * Prefer find python by location
 * Specify vindas python executable since on MacOS there is another
 * Xfjshajs
 * ...
 * Test cython import
 * Explicitly specify everything.
 * Add back a separate pyopenms package
astrovsky01 pushed a commit that referenced this pull request Apr 25, 2022
Merge PR bioconda#33790, commits were: 
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update PGCGAP to v1.0.34

Specified dependency version numbers to spend less memory when performing recipe testing.
 * update pgcgap build number

specify the version of all dependences to occupy less memory
 * Update build number

add dependencies
 * Merge branch 'master' into pgcgap3
 * Merge branch 'bioconda:master' into master
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update build-fail-blacklist

remove PGCGAP
 * Update meta.yaml
 * Merge branch 'master' into pgcgap3
 * Merge branch 'bioconda:master' into master
 * Remove some dependencies to solve error code 137
 * Update PGCGAP to v1.0.33
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'master' of https://github.com/liaochenlanruo/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'bioconda:master' into master
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request bioconda#3 from bioconda/master

Update local
 * Merge pull request #1 from bioconda/master

Update local
astrovsky01 pushed a commit that referenced this pull request Apr 25, 2022
Merge PR bioconda#34268, commits were: 
 * Update build.sh
 * Merge branch 'master' into btllib_recipe
 * path fix
 * version and fixes
 * python wrapper and fixes
 * python wrapper and fixes
 * v1.4.1
 * local build fixes
 * lint fixes
 * Merge pull request #1 from vlad0x00/patch-1

Update meta.yaml
 * Merge branch 'btllib_recipe' into patch-1
 * rm extra codes
 * rm extra codes
 * v1.4.0
 * Update meta.yaml
 * swtich to openmp and gcc v6
 * create recipes fpr btllib
astrovsky01 pushed a commit that referenced this pull request May 9, 2022
Merge PR bioconda#34517, commits were: 
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Add new package mgca
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'master' of https://github.com/liaochenlanruo/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'bioconda:master' into master
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request bioconda#3 from bioconda/master

Update local
 * Merge pull request #1 from bioconda/master

Update local
astrovsky01 pushed a commit that referenced this pull request May 9, 2022
Merge PR bioconda#34556, commits were: 
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update dependence
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'master' of https://github.com/liaochenlanruo/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'bioconda:master' into master
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request bioconda#3 from bioconda/master

Update local
 * Merge pull request #1 from bioconda/master

Update local
astrovsky01 pushed a commit that referenced this pull request May 9, 2022
Merge PR bioconda#34462, commits were: 
 * Update meta.yaml
 * Fix build
 * Is this the way?
 * Remove version pin
 * Pin dotnet sdk and runtime versions to 5.0
 * Merge branch 'bioconda:master' into master
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request May 9, 2022
Merge PR bioconda#34476, commits were: 
 * Update meta.yaml
 * Re-add openssl pin
 * Add openssl req without pin
 * Remove openssl dependency, move back to nuget instead of github releases
 * Fix file name issue, add openssl runtime dep
 * Fix package build
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request May 9, 2022
Merge PR bioconda#34559, commits were: 
 * Update meta.yaml
 * Update version to 0.0.8, fix build
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request May 9, 2022
Merge PR bioconda#34560, commits were: 
 * Update version to 0.0.8, fix build
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request May 9, 2022
Merge PR bioconda#34527, commits were: 
 * bumped build number

bumped build number to 2
 * Merge pull request #1 from USDA-ARS-GBRU/itsxpress-patch-1

Update to ITSxpress
 * Versioned Vsearch 

Versioned Vsearch to fix breaking change in API of fulllength-rerep in vsearch 2.20.
astrovsky01 pushed a commit that referenced this pull request May 9, 2022
Merge PR bioconda#34566, commits were: 
 * Merge branch 'master' into strainscan
 * add strainscan recipes 5
 * add strainscan recipes 4
 * add strainscan recipes 3
 * add strainscan recipes 2
 * add strainscan recipes
 * Merge pull request #1 from bioconda/master

add strainscan recipes
 * add strainscan recipes
astrovsky01 pushed a commit that referenced this pull request May 9, 2022
Merge PR bioconda#34689, commits were: 
 * Fix build
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request May 9, 2022
Merge PR bioconda#34684, commits were: 
 * Fix build
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request May 9, 2022
Merge PR bioconda#34685, commits were: 
 * Fix build
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request May 9, 2022
Merge PR bioconda#34686, commits were: 
 * Fix build
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request May 9, 2022
Merge PR bioconda#34699, commits were: 
 * Update meta.yaml
 * adding version information
 * not including build or ref patch
 * not updating dipcall
 * using python build
 * removing ref patch
 * changing to AE repo
 * Merge pull request #1 from bioconda/master

updating with bioconda
 * adding bedtk depdendency to dipcall
astrovsky01 pushed a commit that referenced this pull request Aug 22, 2022
Merge PR bioconda#36252, commits were: 
 * Set build number to 0
 * Revert "Set build number to 0"

This reverts commit f2ddb61.
 * Set build number to 0
 * Increase version number
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'bioconda:master' into master
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from bioconda/master

Update Fork
astrovsky01 pushed a commit that referenced this pull request Aug 22, 2022
Merge PR bioconda#36495, commits were: 
 * Merge branch 'master' of https://github.com/ChaissonLab/bioconda-recipes
 * Fixed version number to not start with a v.
 * Merge branch 'master' into master
 * Reset build number to 0
 * Merge branch 'master' of https://github.com/ChaissonLab/bioconda-recipes

Conflicts:
	recipes/lra/meta.yaml
 * Merge branch 'bioconda:master' into master
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge https://github.com/bioconda/bioconda-recipes
 * Merge pull request #1 from mchaisso/lra_conda

Update Lra conda
 * Updated build number
 * Bumped version
 * Updated build
 * Testing lra conda
astrovsky01 pushed a commit that referenced this pull request Nov 1, 2022
Merge PR bioconda#37651, commits were: 
 * Merge remote-tracking branch 'upstream/master'
 * Merge branch 'master' into master
 * Updated meta.yaml in geofetch 4
 * Updated meta.yaml in geofetch 3
 * Updated meta.yaml in geofetch 2
 * Updated meta.yaml in geofetch
 * Updated meta.yaml in geofetch
 * Merge branch 'master' into master
 * Merge branch 'master' into master
 * Merge pull request #1 from Khoroshevskyi/geofetch_upload

Geofetch upload
 * Updated meta.yaml in geofetch
 * Added geofetch project to bioconda
astrovsky01 pushed a commit that referenced this pull request Nov 1, 2022
Merge PR bioconda#37080, commits were: 
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Merge branch 'master' into master
 * Merge branch 'master' into master
 * Merge pull request bioconda#8 from marcDabad/cvlr_package

new emas commit
 * new emas commit
 * Merge pull request bioconda#7 from marcDabad/cvlr_package

fix variable
 * fix variable
 * Merge branch 'master' into master
 * Merge pull request bioconda#6 from marcDabad/cvlr_package

gcc 2 cc
 * gcc 2 cc
 * Merge branch 'master' into master
 * Merge pull request bioconda#5 from marcDabad/cvlr_package

passes tests in local
 * passes tests in local
 * Merge branch 'master' into master
 * Merge pull request bioconda#4 from marcDabad/cvlr_package

cc
 * cc
 * Merge pull request bioconda#3 from marcDabad/cvlr_package

Cvlr package
 * Merge branch 'master' into master
 * Merge branch 'cvlr_package' of https://github.com/marcDabad/bioconda-recipes into cvlr_package
 * cvlr_recipe
 * Merge pull request bioconda#2 from marcDabad/cvlr_package

Cvlr package
 * Merge branch 'master' into cvlr_package
 * Merge pull request #1 from bioconda/master

update
 * cvlr_recipe
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