Code

Ws#9

Code

Merged

ChrisgKent merged 21 commits intomainartic-network/primalscheme3:mainfrom wsartic-network/primalscheme3:wsCopy head branch name to clipboardJun 4, 2024

+682-333

Commits

Commits on Apr 22, 2024

• /Users/kentcg/primalscheme3/primalscheme3/core/create_reports.py

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  ChrisgKent

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  b80a41d

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• Added MSA qc fail to log

  ChrisgKent

  committed
  3c69cef

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• Fixed an edgecase in which a kmer with an N could be passed into wrap_walk and not detected, causing the interaction check to crash

  ChrisgKent

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  377358d

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Commits on Apr 23, 2024

• Removed whitespace from the plotdata.json.gz

  ChrisgKent

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  a6f5788

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Commits on Apr 25, 2024

• Got ProgressManager working for schemecreate

  ChrisgKent

  committed
  6bcc6d5

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Commits on Apr 29, 2024

• Updated the progress manager to contain a overrideable signal func

  ChrisgKent

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Commits on May 2, 2024

• Updated digestions messages

  ChrisgKent

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  1e60325

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• Updated tests to use a progressManager

  ChrisgKent

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  c9ee48a

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• Fixed linting issue

  ChrisgKent

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  986aba3

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• Added Progress manager to all options

  ChrisgKent

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  a0a3f19

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• Updated gitignore

  ChrisgKent

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  7d0d173

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• Lock files updates

  ChrisgKent

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  2e7649e

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Commits on May 3, 2024

• Made the printing of PrimerPair.amplicon_number and KMers primernumber 1based

  ChrisgKent

  committed
  ed5e0dc

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• Updated tests to reflect 1based primer number

  ChrisgKent

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  97143bd

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• Updated ampliconnumber to be 1based

  ChrisgKent

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  7c3dd4e

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• linting

  ChrisgKent

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  d95280c

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Commits on May 14, 2024

• Added a \n to the end of all output .bed files

  ChrisgKent

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  57ba81a

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Commits on May 31, 2024

• Fixed panel mode. Added a gc normaliseation step for primers

  ChrisgKent

  committed
  14f1d61

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Commits on Jun 3, 2024

• Added progress tracker to the scheme generation. Added Chromname field to the process tracker

  ChrisgKent

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  7796c62

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• Added a formatting precommit hook

  ChrisgKent

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  329b0f5

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• Ensured that ProgressTracker emits the signal on change

  ChrisgKent

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  9897b96

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