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Updated tests to reflect 1based primer number
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@ChrisgKent
ChrisgKent committed May 3, 2024
1 parent ed5e0dc commit 97143bd
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Showing 4 changed files with 195 additions and 195 deletions.
4 changes: 2 additions & 2 deletions primalscheme3/core/classes.py
View file
Original file line number Diff line number Diff line change
Expand Up @@ -253,10 +253,10 @@ def to_bed(self) -> str:
def __str__(self):
return self.fprimer.__str__(
reference=f"{self.chrom_name}",
amplicon_prefix=f"{self.amplicon_prefix}_{self.amplicon_number + 1}",
amplicon_prefix=f"{self.amplicon_prefix}_{self.amplicon_number}",
pool=self.pool + 1,
) + self.rprimer.__str__(
reference=f"{self.chrom_name}",
amplicon_prefix=f"{self.amplicon_prefix}_{self.amplicon_number + 1}",
amplicon_prefix=f"{self.amplicon_prefix}_{self.amplicon_number}",
pool=self.pool + 1,
)
10 changes: 5 additions & 5 deletions tests/core/test_classes.py
View file
Original file line number Diff line number Diff line change
Expand Up @@ -39,7 +39,7 @@ def test_string_single(self):
# Test asignments
self.assertEqual(
fkmer.__str__(reference, amplicon_prefix, pool),
"reference\t96\t100\tamplicon_prefix_LEFT_0\tpool\t+\tATGC\n",
"reference\t96\t100\tamplicon_prefix_LEFT_1\tpool\t+\tATGC\n",
)

def test_string_multiple(self):
Expand All @@ -55,7 +55,7 @@ def test_string_multiple(self):
# Test asignments
self.assertEqual(
fkmer.__str__(reference, amplicon_prefix, pool),
"reference\t96\t100\tamplicon_prefix_LEFT_0\tpool\t+\tATGC\nreference\t95\t100\tamplicon_prefix_LEFT_1\tpool\t+\tATGCA\n",
"reference\t96\t100\tamplicon_prefix_LEFT_1\tpool\t+\tATGC\nreference\t95\t100\tamplicon_prefix_LEFT_2\tpool\t+\tATGCA\n",
)


Expand Down Expand Up @@ -105,7 +105,7 @@ def test_string_single(self):
# Test asignments
self.assertEqual(
rkmer.__str__(reference, amplicon_prefix, pool),
"reference\t100\t104\tamplicon_prefix_RIGHT_0\tpool\t-\tATGC\n",
"reference\t100\t104\tamplicon_prefix_RIGHT_1\tpool\t-\tATGC\n",
)

def test_string_multiple(self):
Expand All @@ -121,7 +121,7 @@ def test_string_multiple(self):
# Test asignments
self.assertEqual(
rkmer.__str__(reference, amplicon_prefix, pool),
"reference\t100\t104\tamplicon_prefix_RIGHT_0\tpool\t-\tATGC\nreference\t100\t105\tamplicon_prefix_RIGHT_1\tpool\t-\tATGCA\n",
"reference\t100\t104\tamplicon_prefix_RIGHT_1\tpool\t-\tATGC\nreference\t100\t105\tamplicon_prefix_RIGHT_2\tpool\t-\tATGCA\n",
)


Expand Down Expand Up @@ -180,7 +180,7 @@ def test_to_bed(self):
primerpair.chrom_name = expected_refname
primerpair.amplicon_prefix = expected_amplicon_prefix

expected_str = f"{expected_refname}\t85\t100\t{expected_amplicon_prefix}_0_LEFT_0\t{expected_pool}\t+\tACTAGCTAGCTAGCA\n{expected_refname}\t1000\t1012\t{expected_amplicon_prefix}_0_RIGHT_0\t{expected_pool}\t-\tATCGATCGGTAC\n"
expected_str = f"{expected_refname}\t85\t100\t{expected_amplicon_prefix}_0_LEFT_1\t{expected_pool}\t+\tACTAGCTAGCTAGCA\n{expected_refname}\t1000\t1012\t{expected_amplicon_prefix}_0_RIGHT_1\t{expected_pool}\t-\tATCGATCGGTAC\n"

self.assertEqual(primerpair.to_bed(), expected_str)

Expand Down
188 changes: 94 additions & 94 deletions tests/test_data/test_bedfile_header.bed
View file
Original file line number Diff line number Diff line change
@@ -1,95 +1,95 @@
# HEADER
NC_003977.2 36 60 aa548b2a_0_LEFT_0 1 + AGAGTGAGGGGCCTATACTTTCCT
NC_003977.2 38 60 aa548b2a_0_LEFT_1 1 + AGTCAGGGCCCTGTACTTTCCT
NC_003977.2 35 60 aa548b2a_0_LEFT_2 1 + CAGAGTCAGGGGTCTGTATTTTCCT
NC_003977.2 35 60 aa548b2a_0_LEFT_3 1 + CAGAGTGAGGGGCCTATATTTTCCT
NC_003977.2 34 60 aa548b2a_0_LEFT_4 1 + CCAGAGTAAGAGGCCTGTATTTTCCT
NC_003977.2 34 60 aa548b2a_0_LEFT_5 1 + CCAGAGTAAGGGGCCTATACTTTCCT
NC_003977.2 35 60 aa548b2a_0_LEFT_6 1 + GAGGGTAAGGGCTCTGTATTTTCCT
NC_003977.2 37 60 aa548b2a_0_LEFT_7 1 + GAGTCAGGGCTCTGTACTTTCCT
NC_003977.2 37 60 aa548b2a_0_LEFT_8 1 + GAGTCAGGGGCCTGTATTTTCCT
NC_003977.2 37 60 aa548b2a_0_LEFT_9 1 + GAGTGAGAGGCCTGTATTTCCCT
NC_003977.2 38 60 aa548b2a_0_LEFT_10 1 + GGTGAGAGGCCTGTATTTCCCT
NC_003977.2 584 607 aa548b2a_0_RIGHT_0 1 - GAATACAGGTGCAGTTTCCGTCC
NC_003977.2 584 608 aa548b2a_0_RIGHT_1 1 - GGAATACAAGTGCAGTTTCCGTCC
NC_003977.2 584 608 aa548b2a_0_RIGHT_2 1 - GGAATACAGGTGCAATTTCCGTCC
NC_003977.2 584 608 aa548b2a_0_RIGHT_3 1 - GGAATACAGGTGCAGTTTCCATCC
NC_003977.2 584 609 aa548b2a_0_RIGHT_4 1 - GGGAATACAAGTGCAATTTCCGTCC
NC_003977.2 584 609 aa548b2a_0_RIGHT_5 1 - GGGAATACAGGTGCAATTTCCATCC
NC_003977.2 462 482 aa548b2a_1_LEFT_0 2 + ATGTTGCCCGTGTGTCCTCT
NC_003977.2 459 482 aa548b2a_1_LEFT_1 2 + GGTATGTTGCCCGTTTGTCCTCT
NC_003977.2 460 482 aa548b2a_1_LEFT_2 2 + GTATGTTGCCCGTCTGTCCTCT
NC_003977.2 999 1022 aa548b2a_1_RIGHT_0 2 - AGCAAAACCCAAAAGACCCACAA
NC_003977.2 999 1023 aa548b2a_1_RIGHT_1 2 - CAGCAAATCCCAAAAGACCCACAA
NC_003977.2 999 1021 aa548b2a_1_RIGHT_2 2 - GCAAAACCCAGAAGACCCACAA
NC_003977.2 999 1021 aa548b2a_1_RIGHT_3 2 - GCAAACCCCAAAAGACCCACAA
NC_003977.2 999 1021 aa548b2a_1_RIGHT_4 2 - GCAAAGCCCAAAAGACCCACAA
NC_003977.2 999 1021 aa548b2a_1_RIGHT_5 2 - GCAAAGCCCAACAGACCCACAA
NC_003977.2 999 1021 aa548b2a_1_RIGHT_6 2 - GCAAAGCCCAGAAGACCCACAA
NC_003977.2 999 1021 aa548b2a_1_RIGHT_7 2 - GCGAACCCCAAAAGACCCACAA
NC_003977.2 881 906 aa548b2a_2_LEFT_0 1 + GGATATGTAATTGGGAGTTGGGGCA
NC_003977.2 881 906 aa548b2a_2_LEFT_1 1 + GGATATGTAATTGGGTGTTGGGGCA
NC_003977.2 880 906 aa548b2a_2_LEFT_2 1 + GGGATATGTAATTGGAAGTTGGGGCA
NC_003977.2 880 906 aa548b2a_2_LEFT_3 1 + GGGATATGTCATTGGAAGTTGGGGTA
NC_003977.2 880 906 aa548b2a_2_LEFT_4 1 + GGGCTATGTCATTGGATGTTATGGGT
NC_003977.2 880 906 aa548b2a_2_LEFT_5 1 + GGGGTATGTAATTGGAAGTTGGGGTA
NC_003977.2 880 906 aa548b2a_2_LEFT_6 1 + GGGTTACATAATTGGAAGTTGGGGAA
NC_003977.2 880 906 aa548b2a_2_LEFT_7 1 + GGGTTATGTAATTGGAAGTTGGGGGT
NC_003977.2 881 906 aa548b2a_2_LEFT_8 1 + GGTTATGTTATTGGCAGTTGGGGAT
NC_003977.2 876 906 aa548b2a_2_LEFT_9 1 + TCATGGGATATATAATTGGAAGTTGGGGTA
NC_003977.2 879 906 aa548b2a_2_LEFT_10 1 + TGGGATATGTAATTGGAAGTTGGGGTA
NC_003977.2 879 906 aa548b2a_2_LEFT_11 1 + TGGGATATGTAATTGGATGTTGGGGTA
NC_003977.2 1388 1408 aa548b2a_2_RIGHT_0 1 - AGGATCCAGTTGGCAGCACA
NC_003977.2 1388 1411 aa548b2a_2_RIGHT_1 1 - CGAAGGATCCAGTTGGCAGTACA
NC_003977.2 1388 1410 aa548b2a_2_RIGHT_2 1 - GCAGGATCCAGTTGGCAGTACA
NC_003977.2 1388 1412 aa548b2a_2_RIGHT_3 1 - GCGAAGAATCCAGTTGGCAGTACA
NC_003977.2 1173 1195 aa548b2a_3_LEFT_0 2 + TCTGCCAAGTGTTTGCTGATGC
NC_003977.2 1175 1195 aa548b2a_3_LEFT_1 2 + TGCCAAGTGTTTGCTGACGC
NC_003977.2 1173 1195 aa548b2a_3_LEFT_2 2 + TGTGCCAAGTGTTTGCTGATGC
NC_003977.2 1681 1703 aa548b2a_3_RIGHT_0 2 - CCTCAAGGTCGGTCGTTGACAT
NC_003977.2 1681 1704 aa548b2a_3_RIGHT_1 2 - GCCTCAAGGTCGGTTGTTGACAT
NC_003977.2 1579 1600 aa548b2a_4_LEFT_0 1 + TGTGCACTTCGCTTCACCTCT
NC_003977.2 2111 2136 aa548b2a_4_RIGHT_0 1 - ATCTTCCAAATTAACACCCACCCAG
NC_003977.2 2111 2136 aa548b2a_4_RIGHT_1 1 - ATCTTCCAAATTTACACCCACCCAG
NC_003977.2 2111 2134 aa548b2a_4_RIGHT_2 1 - CGTCCAAATTACTTCCCACCCAG
NC_003977.2 2111 2134 aa548b2a_4_RIGHT_3 1 - CTTCCAAATTACCACCCACCCAG
NC_003977.2 2111 2137 aa548b2a_4_RIGHT_4 1 - GATCTTCCAAATTACTTCCCACCCAG
NC_003977.2 2111 2138 aa548b2a_4_RIGHT_5 1 - GGATCTTCCAAATTATTACCCACCCAG
NC_003977.2 2111 2136 aa548b2a_4_RIGHT_6 1 - GTCTTCCAAATTACTTCCCACCCAG
NC_003977.2 2111 2135 aa548b2a_4_RIGHT_7 1 - TCTTCCAAATTACCTCCCACCCAG
NC_003977.2 2020 2042 aa548b2a_5_LEFT_0 2 + AGGCCTTAGAGTCTCCGGAACA
NC_003977.2 2019 2042 aa548b2a_5_LEFT_1 2 + GAAGCCTTAGAGTCTCCTGAGCA
NC_003977.2 2019 2042 aa548b2a_5_LEFT_2 2 + GATGCCTTAGAGTCTCCTGAGCA
NC_003977.2 2018 2042 aa548b2a_5_LEFT_3 2 + GGATGCCTTAGAATCTCCTGAGCA
NC_003977.2 2535 2564 aa548b2a_5_RIGHT_0 2 - CCTGCAAATGAATGTTAGGAAAAGAAGGA
NC_003977.2 2535 2564 aa548b2a_5_RIGHT_1 2 - CCTGTAAATGAATGTCAGGAAAAGAAGGA
NC_003977.2 2535 2564 aa548b2a_5_RIGHT_2 2 - CCTGTAAATGAATGTTAGGAAAGGAGGGA
NC_003977.2 2535 2566 aa548b2a_5_RIGHT_3 2 - CTCTTGTAAATGAATCTTAGGAAAGGAAGGA
NC_003977.2 2535 2567 aa548b2a_5_RIGHT_4 2 - CTTGGTGTAAATGTATATTAGGAAAAGAGGGT
NC_003977.2 2535 2561 aa548b2a_5_RIGHT_5 2 - GCAAATGAATGTGAGGAAAGGAGGGA
NC_003977.2 2535 2564 aa548b2a_5_RIGHT_6 2 - GGTGCAAATGAATATCAGGAAAAGATGGA
NC_003977.2 2535 2568 aa548b2a_5_RIGHT_7 2 - TCTTGGTGTAAATGTATATTAGGAAAAGAAGGT
NC_003977.2 2535 2568 aa548b2a_5_RIGHT_8 2 - TCTTGGTGTAAATGTATATTAGGAAAAGATGGT
NC_003977.2 2535 2565 aa548b2a_5_RIGHT_9 2 - TCTTTCAAATGAATGTGAGGAAAAGAAGGA
NC_003977.2 2535 2562 aa548b2a_5_RIGHT_10 2 - TGCAAATGAATGTCAGGAAAAGAAGGA
NC_003977.2 2535 2562 aa548b2a_5_RIGHT_11 2 - TGCAAATGAATGTTAGGAAAAGAGGGA
NC_003977.2 2535 2562 aa548b2a_5_RIGHT_12 2 - TGTAAATGAATGTGAGGAAAGGAGGGA
NC_003977.2 2535 2563 aa548b2a_5_RIGHT_13 2 - TTTCAAATGAATGTGAGGAAAAGAGGGA
NC_003977.2 2412 2434 aa548b2a_6_LEFT_0 1 + CCGCGTCGCAGAAGATCTCAAT
NC_003977.2 2411 2434 aa548b2a_6_LEFT_1 1 + GCCGCGTCGCAGAAGATCTAAAT
NC_003977.2 2949 2970 aa548b2a_6_RIGHT_0 1 - AAGGGTCCTTGTTGGGGTTGA
NC_003977.2 2949 2970 aa548b2a_6_RIGHT_1 1 - AGTTGTCCTTGTGCGGGTTGA
NC_003977.2 2949 2971 aa548b2a_6_RIGHT_2 1 - CAGTGGTCCTTGATGGGGTTGA
NC_003977.2 2949 2972 aa548b2a_6_RIGHT_3 1 - CCAGGTGTCCTTGTTGGGATTGA
NC_003977.2 2949 2972 aa548b2a_6_RIGHT_4 1 - CCAGTGATCCTTGTTGGGGTTGA
NC_003977.2 2949 2972 aa548b2a_6_RIGHT_5 1 - CCAGTTGTCCTTGTGTGGGTTGA
NC_003977.2 2949 2973 aa548b2a_6_RIGHT_6 1 - GCCAATGATCCTTGTTGGGGTTGA
NC_003977.2 2949 2973 aa548b2a_6_RIGHT_7 1 - GCCAATTGTCCTTGTGTGGATTGA
NC_003977.2 2949 2973 aa548b2a_6_RIGHT_8 1 - GCCATTGATCCTTGTTGGGGTTGA
NC_003977.2 2949 2974 aa548b2a_6_RIGHT_9 1 - GGCCAATTGTCCTTGTTTTTGTTGA
NC_003977.2 2949 2973 aa548b2a_6_RIGHT_10 1 - TCCAGTGGTCTTTGTTGGGATTGT
NC_003977.2 2814 2838 aa548b2a_7_LEFT_0 2 + CGGGTCACCATATTCTTGGGAACA
NC_003977.2 2815 2838 aa548b2a_7_LEFT_1 2 + GGGTCACCATATTCCTGGGAACA
NC_003977.2 2814 2838 aa548b2a_7_LEFT_2 2 + TGGGTCACCATATTCTTGGGAACA
NC_003977.2 2814 2838 aa548b2a_7_LEFT_3 2 + TGGGTCACCTTATTCTTGGGAACA
NC_003977.2 248 272 aa548b2a_7_RIGHT_0 2 - AGAGAAGTCCACCACGAGTCTAGA
NC_003977.2 36 60 aa548b2a_0_LEFT_1 1 + AGAGTGAGGGGCCTATACTTTCCT
NC_003977.2 38 60 aa548b2a_0_LEFT_2 1 + AGTCAGGGCCCTGTACTTTCCT
NC_003977.2 35 60 aa548b2a_0_LEFT_3 1 + CAGAGTCAGGGGTCTGTATTTTCCT
NC_003977.2 35 60 aa548b2a_0_LEFT_4 1 + CAGAGTGAGGGGCCTATATTTTCCT
NC_003977.2 34 60 aa548b2a_0_LEFT_5 1 + CCAGAGTAAGAGGCCTGTATTTTCCT
NC_003977.2 34 60 aa548b2a_0_LEFT_6 1 + CCAGAGTAAGGGGCCTATACTTTCCT
NC_003977.2 35 60 aa548b2a_0_LEFT_7 1 + GAGGGTAAGGGCTCTGTATTTTCCT
NC_003977.2 37 60 aa548b2a_0_LEFT_8 1 + GAGTCAGGGCTCTGTACTTTCCT
NC_003977.2 37 60 aa548b2a_0_LEFT_9 1 + GAGTCAGGGGCCTGTATTTTCCT
NC_003977.2 37 60 aa548b2a_0_LEFT_10 1 + GAGTGAGAGGCCTGTATTTCCCT
NC_003977.2 38 60 aa548b2a_0_LEFT_11 1 + GGTGAGAGGCCTGTATTTCCCT
NC_003977.2 584 607 aa548b2a_0_RIGHT_1 1 - GAATACAGGTGCAGTTTCCGTCC
NC_003977.2 584 608 aa548b2a_0_RIGHT_2 1 - GGAATACAAGTGCAGTTTCCGTCC
NC_003977.2 584 608 aa548b2a_0_RIGHT_3 1 - GGAATACAGGTGCAATTTCCGTCC
NC_003977.2 584 608 aa548b2a_0_RIGHT_4 1 - GGAATACAGGTGCAGTTTCCATCC
NC_003977.2 584 609 aa548b2a_0_RIGHT_5 1 - GGGAATACAAGTGCAATTTCCGTCC
NC_003977.2 584 609 aa548b2a_0_RIGHT_6 1 - GGGAATACAGGTGCAATTTCCATCC
NC_003977.2 462 482 aa548b2a_1_LEFT_1 2 + ATGTTGCCCGTGTGTCCTCT
NC_003977.2 459 482 aa548b2a_1_LEFT_2 2 + GGTATGTTGCCCGTTTGTCCTCT
NC_003977.2 460 482 aa548b2a_1_LEFT_3 2 + GTATGTTGCCCGTCTGTCCTCT
NC_003977.2 999 1022 aa548b2a_1_RIGHT_1 2 - AGCAAAACCCAAAAGACCCACAA
NC_003977.2 999 1023 aa548b2a_1_RIGHT_2 2 - CAGCAAATCCCAAAAGACCCACAA
NC_003977.2 999 1021 aa548b2a_1_RIGHT_3 2 - GCAAAACCCAGAAGACCCACAA
NC_003977.2 999 1021 aa548b2a_1_RIGHT_4 2 - GCAAACCCCAAAAGACCCACAA
NC_003977.2 999 1021 aa548b2a_1_RIGHT_5 2 - GCAAAGCCCAAAAGACCCACAA
NC_003977.2 999 1021 aa548b2a_1_RIGHT_6 2 - GCAAAGCCCAACAGACCCACAA
NC_003977.2 999 1021 aa548b2a_1_RIGHT_7 2 - GCAAAGCCCAGAAGACCCACAA
NC_003977.2 999 1021 aa548b2a_1_RIGHT_8 2 - GCGAACCCCAAAAGACCCACAA
NC_003977.2 881 906 aa548b2a_2_LEFT_1 1 + GGATATGTAATTGGGAGTTGGGGCA
NC_003977.2 881 906 aa548b2a_2_LEFT_2 1 + GGATATGTAATTGGGTGTTGGGGCA
NC_003977.2 880 906 aa548b2a_2_LEFT_3 1 + GGGATATGTAATTGGAAGTTGGGGCA
NC_003977.2 880 906 aa548b2a_2_LEFT_4 1 + GGGATATGTCATTGGAAGTTGGGGTA
NC_003977.2 880 906 aa548b2a_2_LEFT_5 1 + GGGCTATGTCATTGGATGTTATGGGT
NC_003977.2 880 906 aa548b2a_2_LEFT_6 1 + GGGGTATGTAATTGGAAGTTGGGGTA
NC_003977.2 880 906 aa548b2a_2_LEFT_7 1 + GGGTTACATAATTGGAAGTTGGGGAA
NC_003977.2 880 906 aa548b2a_2_LEFT_8 1 + GGGTTATGTAATTGGAAGTTGGGGGT
NC_003977.2 881 906 aa548b2a_2_LEFT_9 1 + GGTTATGTTATTGGCAGTTGGGGAT
NC_003977.2 876 906 aa548b2a_2_LEFT_10 1 + TCATGGGATATATAATTGGAAGTTGGGGTA
NC_003977.2 879 906 aa548b2a_2_LEFT_11 1 + TGGGATATGTAATTGGAAGTTGGGGTA
NC_003977.2 879 906 aa548b2a_2_LEFT_12 1 + TGGGATATGTAATTGGATGTTGGGGTA
NC_003977.2 1388 1408 aa548b2a_2_RIGHT_1 1 - AGGATCCAGTTGGCAGCACA
NC_003977.2 1388 1411 aa548b2a_2_RIGHT_2 1 - CGAAGGATCCAGTTGGCAGTACA
NC_003977.2 1388 1410 aa548b2a_2_RIGHT_3 1 - GCAGGATCCAGTTGGCAGTACA
NC_003977.2 1388 1412 aa548b2a_2_RIGHT_4 1 - GCGAAGAATCCAGTTGGCAGTACA
NC_003977.2 1173 1195 aa548b2a_3_LEFT_1 2 + TCTGCCAAGTGTTTGCTGATGC
NC_003977.2 1175 1195 aa548b2a_3_LEFT_2 2 + TGCCAAGTGTTTGCTGACGC
NC_003977.2 1173 1195 aa548b2a_3_LEFT_3 2 + TGTGCCAAGTGTTTGCTGATGC
NC_003977.2 1681 1703 aa548b2a_3_RIGHT_1 2 - CCTCAAGGTCGGTCGTTGACAT
NC_003977.2 1681 1704 aa548b2a_3_RIGHT_2 2 - GCCTCAAGGTCGGTTGTTGACAT
NC_003977.2 1579 1600 aa548b2a_4_LEFT_1 1 + TGTGCACTTCGCTTCACCTCT
NC_003977.2 2111 2136 aa548b2a_4_RIGHT_1 1 - ATCTTCCAAATTAACACCCACCCAG
NC_003977.2 2111 2136 aa548b2a_4_RIGHT_2 1 - ATCTTCCAAATTTACACCCACCCAG
NC_003977.2 2111 2134 aa548b2a_4_RIGHT_3 1 - CGTCCAAATTACTTCCCACCCAG
NC_003977.2 2111 2134 aa548b2a_4_RIGHT_4 1 - CTTCCAAATTACCACCCACCCAG
NC_003977.2 2111 2137 aa548b2a_4_RIGHT_5 1 - GATCTTCCAAATTACTTCCCACCCAG
NC_003977.2 2111 2138 aa548b2a_4_RIGHT_6 1 - GGATCTTCCAAATTATTACCCACCCAG
NC_003977.2 2111 2136 aa548b2a_4_RIGHT_7 1 - GTCTTCCAAATTACTTCCCACCCAG
NC_003977.2 2111 2135 aa548b2a_4_RIGHT_8 1 - TCTTCCAAATTACCTCCCACCCAG
NC_003977.2 2020 2042 aa548b2a_5_LEFT_1 2 + AGGCCTTAGAGTCTCCGGAACA
NC_003977.2 2019 2042 aa548b2a_5_LEFT_2 2 + GAAGCCTTAGAGTCTCCTGAGCA
NC_003977.2 2019 2042 aa548b2a_5_LEFT_3 2 + GATGCCTTAGAGTCTCCTGAGCA
NC_003977.2 2018 2042 aa548b2a_5_LEFT_4 2 + GGATGCCTTAGAATCTCCTGAGCA
NC_003977.2 2535 2564 aa548b2a_5_RIGHT_1 2 - CCTGCAAATGAATGTTAGGAAAAGAAGGA
NC_003977.2 2535 2564 aa548b2a_5_RIGHT_2 2 - CCTGTAAATGAATGTCAGGAAAAGAAGGA
NC_003977.2 2535 2564 aa548b2a_5_RIGHT_3 2 - CCTGTAAATGAATGTTAGGAAAGGAGGGA
NC_003977.2 2535 2566 aa548b2a_5_RIGHT_4 2 - CTCTTGTAAATGAATCTTAGGAAAGGAAGGA
NC_003977.2 2535 2567 aa548b2a_5_RIGHT_5 2 - CTTGGTGTAAATGTATATTAGGAAAAGAGGGT
NC_003977.2 2535 2561 aa548b2a_5_RIGHT_6 2 - GCAAATGAATGTGAGGAAAGGAGGGA
NC_003977.2 2535 2564 aa548b2a_5_RIGHT_7 2 - GGTGCAAATGAATATCAGGAAAAGATGGA
NC_003977.2 2535 2568 aa548b2a_5_RIGHT_8 2 - TCTTGGTGTAAATGTATATTAGGAAAAGAAGGT
NC_003977.2 2535 2568 aa548b2a_5_RIGHT_9 2 - TCTTGGTGTAAATGTATATTAGGAAAAGATGGT
NC_003977.2 2535 2565 aa548b2a_5_RIGHT_10 2 - TCTTTCAAATGAATGTGAGGAAAAGAAGGA
NC_003977.2 2535 2562 aa548b2a_5_RIGHT_11 2 - TGCAAATGAATGTCAGGAAAAGAAGGA
NC_003977.2 2535 2562 aa548b2a_5_RIGHT_12 2 - TGCAAATGAATGTTAGGAAAAGAGGGA
NC_003977.2 2535 2562 aa548b2a_5_RIGHT_13 2 - TGTAAATGAATGTGAGGAAAGGAGGGA
NC_003977.2 2535 2563 aa548b2a_5_RIGHT_14 2 - TTTCAAATGAATGTGAGGAAAAGAGGGA
NC_003977.2 2412 2434 aa548b2a_6_LEFT_1 1 + CCGCGTCGCAGAAGATCTCAAT
NC_003977.2 2411 2434 aa548b2a_6_LEFT_2 1 + GCCGCGTCGCAGAAGATCTAAAT
NC_003977.2 2949 2970 aa548b2a_6_RIGHT_1 1 - AAGGGTCCTTGTTGGGGTTGA
NC_003977.2 2949 2970 aa548b2a_6_RIGHT_2 1 - AGTTGTCCTTGTGCGGGTTGA
NC_003977.2 2949 2971 aa548b2a_6_RIGHT_3 1 - CAGTGGTCCTTGATGGGGTTGA
NC_003977.2 2949 2972 aa548b2a_6_RIGHT_4 1 - CCAGGTGTCCTTGTTGGGATTGA
NC_003977.2 2949 2972 aa548b2a_6_RIGHT_5 1 - CCAGTGATCCTTGTTGGGGTTGA
NC_003977.2 2949 2972 aa548b2a_6_RIGHT_6 1 - CCAGTTGTCCTTGTGTGGGTTGA
NC_003977.2 2949 2973 aa548b2a_6_RIGHT_7 1 - GCCAATGATCCTTGTTGGGGTTGA
NC_003977.2 2949 2973 aa548b2a_6_RIGHT_8 1 - GCCAATTGTCCTTGTGTGGATTGA
NC_003977.2 2949 2973 aa548b2a_6_RIGHT_9 1 - GCCATTGATCCTTGTTGGGGTTGA
NC_003977.2 2949 2974 aa548b2a_6_RIGHT_10 1 - GGCCAATTGTCCTTGTTTTTGTTGA
NC_003977.2 2949 2973 aa548b2a_6_RIGHT_11 1 - TCCAGTGGTCTTTGTTGGGATTGT
NC_003977.2 2814 2838 aa548b2a_7_LEFT_1 2 + CGGGTCACCATATTCTTGGGAACA
NC_003977.2 2815 2838 aa548b2a_7_LEFT_2 2 + GGGTCACCATATTCCTGGGAACA
NC_003977.2 2814 2838 aa548b2a_7_LEFT_3 2 + TGGGTCACCATATTCTTGGGAACA
NC_003977.2 2814 2838 aa548b2a_7_LEFT_4 2 + TGGGTCACCTTATTCTTGGGAACA
NC_003977.2 248 272 aa548b2a_7_RIGHT_1 2 - AGAGAAGTCCACCACGAGTCTAGA
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