ARTIC Fieldbioinformatics v1.5.1

Well hasn't this been a long time coming?

Fieldbioinformatics now supports rapid barcoded (fragmented) primer trimming and normalisation
Nanopolish has been removed completely due to several compatibility issues
Medaka has also been removed completely due to kicking out long indels in a way that cannot be changed.
Clair3 is now the default variant caller, by default only the r9.4.1 models are available but a artic_get_models command has been added which will fetch the ONT created r10.4.1 models listed in the rerio repository.
The pipeline will also attempt to pick an appropriate model based on the basecall_model_version_id field that is added to read headers by default by ONT sequencers.
Removed longshot entirely, it also kicks out long variants and is now unnecessary due to clair3 being a much better variant caller.
Primer scheme fetcher has been updated to pull from the quick-lab primal hub schemes repository. For schemes not available in this repository you may provide them directly with the arguments --bed and --ref.
Automated docker builds pushing to quay.io for use in nextflow pipelines etc.
Remove some old functionality which is no longer relevant (basecalling, gather, etc)
Re-implement CI as a gh action.
Fix the overlapping variants issue by normalising variants against the pre-consensus using bcftools norm.

What's Changed

Full Changelog: v1.2.4...v1.5.1