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@will-rowe will-rowe released this 14 Jan 20:07
· 45 commits to master since this release
1.2.1
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Learn about vigilant mode.

Patched a bug in the previous release where --strict was failing due to un-indexed VCF being provided to artic-tools.

Also:

  • removes the reliance on a MultiQC artic module, instead we generate some stats from the align_trim output and the vcf_check output, storing these as a JSON file which MultiQC can munch on. I've included this as a feature enabled by --strict, so the extra files aren't produced using the existing pipeline. This also fixes an issue some users were encountering with pip dependencies for not being installed correctly
  • updates the doc with some missing minion sub commands
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