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ENHANCEMENT: Refactor make_depth_mask.py to use maptide instead of pysam pileup #156

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BioWilko opened this issue Jan 23, 2025 · 0 comments
Open

ENHANCEMENT: Refactor make_depth_mask.py to use maptide instead of pysam pileup #156

BioWilko opened this issue Jan 23, 2025 · 0 comments
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enhancement New feature or request

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@BioWilko
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Setting the pileup max_depth to an arbitrarily high threshold is a bad solution, we don't like magic numbers here....
@BioWilko BioWilko added the enhancement New feature or request label Jan 23, 2025
@BioWilko BioWilko mentioned this issue Jan 23, 2025
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@BioWilko BioWilko changed the title [ENHANCEMENT] Refactor make_depth_mask.py to use maptide instead of pysam pileup ENHANCEMENT: Refactor make_depth_mask.py to use maptide instead of pysam pileup Jan 28, 2025
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@BioWilko