Merge pull request #1 from jhnnsrs/with_next

Added modular system

src/index.css

@@ -0,0 +1,76 @@
+@tailwind base;
+@tailwind components;
+@tailwind utilities;
+
+@layer base {
+ :root {
+ --background: 0 0% 100%;
+ --foreground: 240 10% 3.9%;
+
+ --card: 0 0% 100%;
+ --card-foreground: 240 10% 3.9%;
+
+ --popover: 0 0% 100%;
+ --popover-foreground: 240 10% 3.9%;
+
+ --primary: 240 5.9% 10%;
+ --primary-foreground: 0 0% 98%;
+
+ --secondary: 240 4.8% 95.9%;
+ --secondary-foreground: 240 5.9% 10%;
+
+ --muted: 240 4.8% 95.9%;
+ --muted-foreground: 240 3.8% 46.1%;
+
+ --accent: 240 4.8% 95.9%;
+ --accent-foreground: 240 5.9% 10%;
+
+ --destructive: 0 84.2% 60.2%;
+ --destructive-foreground: 0 0% 98%;
+
+ --border: 240 5.9% 90%;
+ --input: 240 5.9% 90%;
+ --ring: 240 10% 3.9%;
+
+ --radius: 0.5rem;
+ }
+
+ .dark {
+ --background: 240 10% 3.9%;
+ --foreground: 0 0% 98%;
+
+ --card: 240 10% 3.9%;
+ --card-foreground: 0 0% 98%;
+
+ --popover: 240 10% 3.9%;
+ --popover-foreground: 0 0% 98%;
+
+ --primary: 0 0% 98%;
+ --primary-foreground: 240 5.9% 10%;
+
+ --secondary: 240 3.7% 15.9%;
+ --secondary-foreground: 0 0% 98%;
+
+ --muted: 240 3.7% 15.9%;
+ --muted-foreground: 240 5% 64.9%;
+
+ --accent: 240 3.7% 15.9%;
+ --accent-foreground: 0 0% 98%;
+
+ --destructive: 0 62.8% 30.6%;
+ --destructive-foreground: 0 0% 98%;
+
+ --border: 240 3.7% 15.9%;
+ --input: 240 3.7% 15.9%;
+ --ring: 240 4.9% 83.9%;
+ }
+}
+
+@layer base {
+ * {
+ @apply border-border;
+ }
+ body {
+ @apply bg-background text-foreground;
+ }
+}

components.json

@@ -0,0 +1,16 @@
+{
+ "$schema": "https://ui.shadcn.com/schema.json",
+ "style": "default",
+ "rsc": false,
+ "tsx": true,
+ "tailwind": {
+ "config": "tailwind.config.js",
+ "css": " src/index.css",
+ "baseColor": "zinc",
+ "cssVariables": true
+ },
+ "aliases": {
+ "components": "src/universal/components",
+ "utils": "src/lib/utils"
+ }
+}

graphql/mikro_next/fragments/antibody.graphql

@@ -0,0 +1,4 @@
+fragment Antibody on Antibody {
+ name
+ epitope
+}

graphql/mikro_next/fragments/camera.graphql

@@ -0,0 +1,10 @@
+fragment Camera on Camera {
+ sensorSizeX
+ sensorSizeY
+ pixelSizeX
+ pixelSizeY
+
+ name
+ serialNumber
+
+}

graphql/mikro_next/fragments/channel.graphql

@@ -0,0 +1,5 @@
+fragment Channel on Channel {
+ id
+ name
+ excitationWavelength
+}

graphql/mikro_next/fragments/credentials.graphql

@@ -0,0 +1,18 @@
+fragment Credentials on Credentials {
+ accessKey
+ status
+ secretKey
+ bucket
+ key
+ sessionToken
+ store
+}
+
+fragment AccessCredentials on AccessCredentials {
+ accessKey
+ secretKey
+ bucket
+ key
+ sessionToken
+ path
+}

graphql/mikro_next/fragments/dataset.graphql

@@ -0,0 +1,31 @@
+fragment Dataset on Dataset {
+ id
+ name
+ description
+ history {
+ ...History
+ }
+ images {
+ ...ListImage
+ }
+ files {
+ ...ListFile
+ }
+ children {
+ ...ListDataset
+ }
+ isDefault
+ pinned
+ createdAt
+ creator {
+ sub
+ }
+ tags
+}
+
+fragment ListDataset on Dataset {
+ id
+ name
+ description
+ isDefault
+}

graphql/mikro_next/fragments/era.graphql

@@ -0,0 +1,5 @@
+fragment Era on Era {
+ id
+ begin
+ name
+}

graphql/mikro_next/fragments/file.graphql

@@ -0,0 +1,15 @@
+fragment File on File {
+ origins {
+ id
+ }
+ id
+ name
+ store {
+ ...BigFileStore
+ }
+}
+
+fragment ListFile on File {
+ id
+ name
+}

graphql/mikro_next/fragments/fluorophore.graphql

@@ -0,0 +1,5 @@
+fragment Fluorophore on Fluorophore {
+ name
+ emissionWavelength
+ excitationWavelength
+}

graphql/mikro_next/fragments/history.graphql

@@ -0,0 +1,6 @@
+fragment History on History {
+ id
+ during
+ kind
+ date
+}

graphql/mikro_next/fragments/image.graphql

@@ -0,0 +1,55 @@
+fragment Image on Image {
+ origins {
+ id
+ }
+ id
+ name
+ store {
+ ...ZarrStore
+ }
+ views {
+ ...ChannelView
+ ...TransformationView
+ ...LabelView
+ ...TimepointView
+ ...OpticsView
+ }
+ pinned
+ renders {
+ ...Snapshot
+ ...Video
+ }
+ dataset {
+ name
+ id
+ }
+ createdAt
+ history(pagination: { limit: 3 }) {
+ ...History
+ }
+ creator {
+ sub
+ }
+ tags
+ metrics {
+ ...ImageMetric
+ }
+ roiOrigins {
+ ...ListROI
+ }
+ fileOrigins {
+ ...ListFile
+ }
+}
+
+fragment ListImage on Image {
+ latestSnapshot {
+ id
+ store {
+ key
+ presignedUrl
+ }
+ }
+ id
+ name
+}

graphql/mikro_next/fragments/instrument.graphql

@@ -0,0 +1,6 @@
+fragment Instrument on Instrument {
+ model
+ name
+ serialNumber
+
+}

graphql/mikro_next/fragments/metric.graphql

@@ -0,0 +1,8 @@
+fragment ImageIntMetric on ImageIntMetric {
+ id
+ value
+}
+
+fragment ImageMetric on ImageMetric {
+ ...ImageIntMetric
+}

graphql/mikro_next/fragments/objective.graphql

@@ -0,0 +1,6 @@
+fragment Objective on Objective {
+ na
+ name
+ serialNumber
+
+}

graphql/mikro_next/fragments/roi.graphql

@@ -0,0 +1,7 @@
+fragment ListROI on ROI {
+ id
+ image {
+ id
+ name
+ }
+}

graphql/mikro_next/fragments/snapshot.graphql

@@ -0,0 +1,7 @@
+fragment Snapshot on Snapshot {
+ id
+ store {
+ key
+ presignedUrl
+ }
+}

graphql/mikro_next/fragments/stage.graphql

@@ -0,0 +1,13 @@
+fragment Stage on Stage {
+ id
+ views {
+ ...TransformationView
+ }
+ pinned
+ name
+}
+
+fragment ListStage on Stage {
+ id
+ name
+}

graphql/mikro_next/fragments/store.graphql

@@ -0,0 +1,22 @@
+fragment ZarrStore on ZarrStore {
+ id
+ key
+ bucket
+ path
+ shape
+ dtype
+}
+
+fragment ParquetStore on ParquetStore {
+ id
+ key
+ bucket
+ path
+}
+
+fragment BigFileStore on BigFileStore {
+ id
+ key
+ bucket
+ path
+}

graphql/mikro_next/fragments/table.graphql

@@ -0,0 +1,10 @@
+fragment Table on Table {
+ origins {
+ id
+ }
+ id
+ name
+ store {
+ ...ParquetStore
+ }
+}

graphql/mikro_next/fragments/video.graphql

@@ -0,0 +1,7 @@
+fragment Video on Video {
+ id
+ store {
+ key
+ presignedUrl
+ }
+}