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Add flair to processing check #1028

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Merged
merged 6 commits into from
Dec 4, 2023
Merged

Add flair to processing check #1028

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c79fb80
improvements of Genfi
Oct 23, 2023
4972324
Revert "improvements of Genfi"
Oct 23, 2023
e6bfb2f
Merge remote-tracking branch 'upstream/dev' into dev
Oct 26, 2023
f252284
Merge remote-tracking branch 'upstream/dev' into dev
Nov 8, 2023
40da584
Merge remote-tracking branch 'upstream/dev' into dev
MatthieuJoulot Dec 4, 2023
835faa0
add_flair_to_processing_check
MatthieuJoulot Dec 4, 2023
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6 changes: 6 additions & 0 deletions clinica/iotools/utils/data_handling.py
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Expand Up @@ -528,6 +528,12 @@ def compute_missing_processing(bids_dir, caps_dir, out_file):
else:
row_df.loc[0, "t1-linear"] = "0"

# Check flair-linear outputs
if path.exists(path.join(session_path, "flair_linear")):
row_df.loc[0, "flair-linear"] = "1"
else:
row_df.loc[0, "flair-linear"] = "0"

# Check t1-freesurfer outputs
if path.exists(path.join(session_path, "t1", "freesurfer_cross_sectional")):
row_df.loc[0, "t1-freesurfer"] = "1"
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