Upgrade to Quarkus 3.0

the main change is migrating from JavaEE to JakartaEE.

- update Quarkus bom from io.quarkus:quarkus-universe-bom to
io.quarkus.platform:quarkus-bom as it was deprecated since Quarkus 2.1
https://github.com/quarkusio/quarkus/wiki/Migration-Guide-2.1#quarkus-universe-bom-is-deprecated
(and it is required to use the Quarkus migration tool)
- launched quarkus `quarkus update --stream=3.0` as mentioned in
https://github.com/quarkusio/quarkus/wiki/Migration-Guide-3.0#automatic-update-tool
which dealt with a fair part of the migration. Then it remained few
little tasks.
- Updated quarkus.index-dependency for jaxb from
org.jboss.spec.javax.xml.bind:jboss-jaxb-api_2.3_spec to
`jakarta.xml.bind:jakarta.xml.bind-api`

fix com-pas#333

current test failure:
```
[ERROR] org.lfenergy.compas.cim.mapping.rest.v1.CompasCimMappingResourceTest.mapCimToScl_WhenCalled_ThenCorrectMessageIsRetrieved
Time elapsed: 1.465 s  <<< FAILURE!
org.opentest4j.AssertionFailedError: expected: not <null>
	at org.junit.jupiter.api.AssertionFailureBuilder.build(AssertionFailureBuilder.java:152)
	at org.junit.jupiter.api.AssertionFailureBuilder.buildAndThrow(AssertionFailureBuilder.java:132)
	at org.junit.jupiter.api.AssertNotNull.failNull(AssertNotNull.java:49)
	at org.junit.jupiter.api.AssertNotNull.assertNotNull(AssertNotNull.java:35)
	at org.junit.jupiter.api.AssertNotNull.assertNotNull(AssertNotNull.java:30)
	at org.junit.jupiter.api.Assertions.assertNotNull(Assertions.java:301)
	at org.lfenergy.compas.cim.mapping.rest.v1.CompasCimMappingResourceTest.mapCimToScl_WhenCalled_ThenCorrectMessageIsRetrieved(CompasCimMappingResourceTest.java:70)
```
suspect logs:
```
2023-05-26 16:28:42,577 WARN  [io.qua.dep.ste.ReflectiveHierarchyStep]
(build-26) Unable to properly register the hierarchy of the following
classes for reflection as they are not in the Jandex index:
	- javax.xml.bind.JAXBElement (source: SmallRyeOpenApiProcessor >
org.lfenergy.compas.cim.mapping.rest.v1.model.MapResponse)
	- javax.xml.namespace.QName (source: SmallRyeOpenApiProcessor >
org.lfenergy.compas.cim.mapping.rest.v1.model.MapResponse)
Consider adding them to the index either by creating a Jandex index for
your dependency via the Maven plugin, an empty META-INF/beans.xml or
quarkus.index-dependency properties.
2023-05-26 16:28:42,895 WARN  [io.qua.arc.pro.BeanArchives] (build-20)
Failed to index javax.xml.bind.JAXBElement: Class does not exist in
ClassLoader QuarkusClassLoader:Deployment Class Loader: TEST@4c579b5b
```
even if before migration there is similar (but not exactly the same)
warning:
```
[WARNING] [io.quarkus.deployment.steps.ReflectiveHierarchyStep] Unable
to properly register the hierarchy of the following classes for
reflection as they are not in the Jandex index:
	- javax.xml.namespace.QName (source: SmallRyeOpenApiProcessor >
org.lfenergy.compas.cim.mapping.rest.v1.model.MapResponse)
Consider adding them to the index either by creating a Jandex index for
your dependency via the Maven plugin, an empty META-INF/beans.xml or
quarkus.index-dependency properties.
```

Signed-off-by: Aurélien Pupier <[email protected]>

app/src/main/java/org/lfenergy/compas/cim/mapping/rest/CompasCimMappingConfiguration.java

@@ -6,7 +6,7 @@
 import io.quarkus.runtime.annotations.RegisterForReflection;
 import org.lfenergy.compas.cim.mapping.mapper.CimToSclMapper;
 
-import javax.enterprise.inject.Produces;
+import jakarta.enterprise.inject.Produces;
 
 /**
  * Create Beans from other dependencies that are used in the application.

app/src/main/java/org/lfenergy/compas/cim/mapping/rest/monitoring/LivenessHealthCheck.java

@@ -7,7 +7,7 @@
 import org.eclipse.microprofile.health.HealthCheckResponse;
 import org.eclipse.microprofile.health.Liveness;
 
-import javax.enterprise.context.ApplicationScoped;
+import jakarta.enterprise.context.ApplicationScoped;
 
 @Liveness
 @ApplicationScoped

app/src/main/java/org/lfenergy/compas/cim/mapping/rest/monitoring/ReadinessHealthCheck.java

@@ -7,7 +7,7 @@
 import org.eclipse.microprofile.health.HealthCheckResponse;
 import org.eclipse.microprofile.health.Readiness;
 
-import javax.enterprise.context.ApplicationScoped;
+import jakarta.enterprise.context.ApplicationScoped;
 
 @Readiness
 @ApplicationScoped

app/src/main/java/org/lfenergy/compas/cim/mapping/rest/v1/CompasCimMappingResource.java

@@ -12,14 +12,14 @@
 import org.lfenergy.compas.cim.mapping.rest.v1.model.MapResponse;
 import org.lfenergy.compas.cim.mapping.service.CompasCimMappingService;
 
-import javax.enterprise.context.RequestScoped;
-import javax.inject.Inject;
-import javax.validation.Valid;
-import javax.ws.rs.Consumes;
-import javax.ws.rs.POST;
-import javax.ws.rs.Path;
-import javax.ws.rs.Produces;
-import javax.ws.rs.core.MediaType;
+import jakarta.enterprise.context.RequestScoped;
+import jakarta.inject.Inject;
+import jakarta.validation.Valid;
+import jakarta.ws.rs.Consumes;
+import jakarta.ws.rs.POST;
+import jakarta.ws.rs.Path;
+import jakarta.ws.rs.Produces;
+import jakarta.ws.rs.core.MediaType;
 
 @Authenticated
 @RequestScoped

app/src/main/java/org/lfenergy/compas/cim/mapping/rest/v1/model/MapRequest.java

@@ -7,11 +7,11 @@
 import org.eclipse.microprofile.openapi.annotations.media.Schema;
 import org.lfenergy.compas.cim.mapping.model.CimData;
 
-import javax.validation.Valid;
-import javax.xml.bind.annotation.XmlAccessType;
-import javax.xml.bind.annotation.XmlAccessorType;
-import javax.xml.bind.annotation.XmlElement;
-import javax.xml.bind.annotation.XmlRootElement;
+import jakarta.validation.Valid;
+import jakarta.xml.bind.annotation.XmlAccessType;
+import jakarta.xml.bind.annotation.XmlAccessorType;
+import jakarta.xml.bind.annotation.XmlElement;
+import jakarta.xml.bind.annotation.XmlRootElement;
 import java.util.List;
 
 import static org.lfenergy.compas.cim.mapping.CimMappingConstants.CIM_MAPPING_SERVICE_V1_NS_URI;

app/src/main/java/org/lfenergy/compas/cim/mapping/rest/v1/model/MapResponse.java

@@ -6,10 +6,10 @@
 import org.eclipse.microprofile.openapi.annotations.media.Schema;
 import org.lfenergy.compas.scl2007b4.model.SCL;
 
-import javax.xml.bind.annotation.XmlAccessType;
-import javax.xml.bind.annotation.XmlAccessorType;
-import javax.xml.bind.annotation.XmlElement;
-import javax.xml.bind.annotation.XmlRootElement;
+import jakarta.xml.bind.annotation.XmlAccessType;
+import jakarta.xml.bind.annotation.XmlAccessorType;
+import jakarta.xml.bind.annotation.XmlElement;
+import jakarta.xml.bind.annotation.XmlRootElement;
 
 import static org.lfenergy.compas.cim.mapping.CimMappingConstants.CIM_MAPPING_SERVICE_V1_NS_URI;
 import static org.lfenergy.compas.cim.mapping.CimMappingConstants.SCL_NS_URI;

app/src/main/java/org/lfenergy/compas/cim/mapping/rest/v1/model/package-info.java

@@ -8,7 +8,7 @@
 )
 package org.lfenergy.compas.cim.mapping.rest.v1.model;
 
-import javax.xml.bind.annotation.XmlNs;
-import javax.xml.bind.annotation.XmlSchema;
+import jakarta.xml.bind.annotation.XmlNs;
+import jakarta.xml.bind.annotation.XmlSchema;
 
 import static org.lfenergy.compas.cim.mapping.CimMappingConstants.CIM_MAPPING_SERVICE_V1_NS_URI;

app/src/main/resources/application.properties

@@ -18,8 +18,8 @@ quarkus.index-dependency.rest-commons.artifact-id = rest-commons
 quarkus.index-dependency.scl2007b4.group-id    = org.lfenergy.compas.core
 quarkus.index-dependency.scl2007b4.artifact-id = scl2007b4
 
-quarkus.index-dependency.jaxb-api.group-id    = org.jboss.spec.javax.xml.bind
-quarkus.index-dependency.jaxb-api.artifact-id = jboss-jaxb-api_2.3_spec
+quarkus.index-dependency.jaxb-api.group-id    = jakarta.xml.bind
+quarkus.index-dependency.jaxb-api.artifact-id = jakarta.xml.bind-api
 
 # Settings needed for native compilation of the project.
 quarkus.native.resources.includes=**/com.powsybl.triplestore.api.TripleStoreFactoryService,CIM*.sparql

pom.xml

@@ -25,7 +25,7 @@ SPDX-License-Identifier: Apache-2.0
 
         <compas.core.version>0.11.0</compas.core.version>
 
-        <quarkus.platform.version>2.16.6.Final</quarkus.platform.version>
+        <quarkus.platform.version>3.0.4.Final</quarkus.platform.version>
         <microprofile-openapi-api.version>3.1</microprofile-openapi-api.version>
         <powsybl.version>5.1.1</powsybl.version>
         <log4j2.version>2.20.0</log4j2.version>
@@ -57,8 +57,8 @@ SPDX-License-Identifier: Apache-2.0
     <dependencyManagement>
         <dependencies>
             <dependency>
-                <groupId>io.quarkus</groupId>
-                <artifactId>quarkus-universe-bom</artifactId>
+                <groupId>io.quarkus.platform</groupId>
+                <artifactId>quarkus-bom</artifactId>
                 <version>${quarkus.platform.version}</version>
                 <type>pom</type>
                 <scope>import</scope>

service/pom.xml

@@ -88,9 +88,9 @@ SPDX-License-Identifier: Apache-2.0
             <artifactId>hibernate-validator</artifactId>
             <scope>test</scope>
         </dependency>
-        <dependency>
-            <groupId>org.glassfish</groupId>
-            <artifactId>jakarta.el</artifactId>
+        <!--~~(No version provided)~~>--><dependency>
+            <groupId>org.glassfish.expressly</groupId>
+            <artifactId>expressly</artifactId>
             <scope>test</scope>
         </dependency>
     </dependencies>

service/src/main/java/org/lfenergy/compas/cim/mapping/cgmes/CgmesCimReader.java

@@ -13,7 +13,7 @@
 import org.lfenergy.compas.cim.mapping.exception.CompasCimMappingException;
 import org.lfenergy.compas.cim.mapping.model.CimData;
 
-import javax.enterprise.context.ApplicationScoped;
+import jakarta.enterprise.context.ApplicationScoped;
 import java.io.InputStream;
 import java.io.StringReader;
 import java.nio.charset.StandardCharsets;

service/src/main/java/org/lfenergy/compas/cim/mapping/constraint/CimDataNamePattern.java

@@ -5,8 +5,8 @@
 
 import org.lfenergy.compas.cim.mapping.constraint.impl.CimDataNamePatternValidator;
 
-import javax.validation.Constraint;
-import javax.validation.Payload;
+import jakarta.validation.Constraint;
+import jakarta.validation.Payload;
 import java.lang.annotation.Documented;
 import java.lang.annotation.Retention;
 import java.lang.annotation.Target;

service/src/main/java/org/lfenergy/compas/cim/mapping/constraint/impl/CimDataNamePatternValidator.java

@@ -6,8 +6,8 @@
 import com.powsybl.cgmes.model.CgmesSubset;
 import org.lfenergy.compas.cim.mapping.constraint.CimDataNamePattern;
 
-import javax.validation.ConstraintValidator;
-import javax.validation.ConstraintValidatorContext;
+import jakarta.validation.ConstraintValidator;
+import jakarta.validation.ConstraintValidatorContext;
 import java.util.Arrays;
 import java.util.regex.Pattern;
 import java.util.stream.Collectors;

service/src/main/java/org/lfenergy/compas/cim/mapping/model/CimData.java

@@ -6,11 +6,11 @@
 import org.eclipse.microprofile.openapi.annotations.media.Schema;
 import org.lfenergy.compas.cim.mapping.constraint.CimDataNamePattern;
 
-import javax.validation.constraints.NotBlank;
-import javax.xml.bind.annotation.XmlAccessType;
-import javax.xml.bind.annotation.XmlAccessorType;
-import javax.xml.bind.annotation.XmlElement;
-import javax.xml.bind.annotation.XmlType;
+import jakarta.validation.constraints.NotBlank;
+import jakarta.xml.bind.annotation.XmlAccessType;
+import jakarta.xml.bind.annotation.XmlAccessorType;
+import jakarta.xml.bind.annotation.XmlElement;
+import jakarta.xml.bind.annotation.XmlType;
 
 import static org.lfenergy.compas.cim.mapping.CimMappingConstants.CIM_MAPPING_SERVICE_V1_NS_URI;
 

service/src/main/java/org/lfenergy/compas/cim/mapping/service/CompasCimMappingService.java

@@ -12,8 +12,8 @@
 import org.lfenergy.compas.scl2007b4.model.THeader;
 import org.lfenergy.compas.scl2007b4.model.THitem;
 
-import javax.enterprise.context.ApplicationScoped;
-import javax.inject.Inject;
+import jakarta.enterprise.context.ApplicationScoped;
+import jakarta.inject.Inject;
 import java.text.SimpleDateFormat;
 import java.util.Date;
 import java.util.List;

service/src/test/java/org/lfenergy/compas/cim/mapping/constraint/impl/CimDataNamePatternValidatorTest.java

@@ -7,8 +7,8 @@
 import org.junit.jupiter.api.Test;
 import org.lfenergy.compas.cim.mapping.constraint.CimDataNamePattern;
 
-import javax.validation.Validation;
-import javax.validation.Validator;
+import jakarta.validation.Validation;
+import jakarta.validation.Validator;
 
 import static org.junit.jupiter.api.Assertions.assertEquals;
 import static org.junit.jupiter.api.Assertions.assertTrue;