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hamming_distance() function in pairwise-alignment.md #327

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I though it would be more intuitive to write a Hamming distance function instead of using scipy's function. This may be more beneficial for the reader in order to have more independance and intuition when it comes to writing Python code.

I though it would be more intuitive to write a Hamming distance function instead of using scipy's function. This may be more beneficial for the reader in order to have more independance and intuition when it comes to writing Python code.
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