Reformat protocols in YAML using terms in FAIR eDNA checklist

[lukenoaa]

No description provided.

[lukenoaa]

YAML is machine readable but more human readable than XML or JSON.

This applies primarily to PCR, where current FAIR eDNA terms are:

• pcr_0_1
• thermocycler
• amplificationReactionVolume
• assay_name
• assay_validation
• targetTaxonomicAssay
• targetTaxonomicScope
• target_gene
• target_subfragment
• ampliconSize
• pcr_primer_forward
• pcr_primer_reverse
• pcr_primer_name_forward
• pcr_primer_name_reverse
• pcr_primer_reference_forward
• pcr_primer_reference_reverse
• pcr_primer_vol_forward
• pcr_primer_vol_reverse
• pcr_primer_conc_forward
• pcr_primer_conc_reverse
• probeReporter
• probeQuencher
• probe_seq
• probe_ref
• probe_conc
• commercial_mm
• custom_mm
• pcr_dna_vol
• pcr_rep
• nucl_acid_amp
• pcr_cond
• annealingTemp
• pcr_cycles
• pcr_analysis_software
• pcr_method_additional

[lukenoaa]

@sammyharding This is what we were talking about today. I think you could start with one of the PCR protocols.