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anb94/README.md

Welcome to my Github page!

🧬 I am Bioinformatics Postdoc at City University of Hong Kong.
🔭 I’m currently working on network-based computational drug repositioning for pancreatic ductal adenocarcinoma (PDAC).
🌱 I’m currently learning single-cell data analysis.
📫 How to reach me: CityUHK email address on my university profile page or message on threads

My Canary repo contains a singularity based tool that was published in BMC Bioinformatics. Canary is a tool which allows for the semi-automated conversion of MaCH files to PLINK files for GWAS analysis.

I am currently working on improvements to a basic RNA-Seq tutorial for new students to follow on the lab server with minimal set up.

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  1. Canary Canary Public

    Automated conversion tool for MaCH (mlinfo and mldose) dosage filse to PLINK files

    Shell 3

  2. minimal-rna-seq-tutorial minimal-rna-seq-tutorial Public

    This repo contains code for running through an RNA-seq workflow: gene-level exploratory analysis and differential expression (CSAMA 2019 version)

    Jupyter Notebook