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@github-actions github-actions released this 17 Apr 00:38
v1.2.0
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1.2.0 (2023-04-17)

Features

  • add a function to extract chromosome names and lengths from a SAM file (413ead9)
  • add a rule for genome indexing (f2d596e)
  • add a rule to convert BAM files to BED (a948d98)
  • add a rule to convert kmers table to PLINK (8c4bfad)
  • add error handling (da92bdb)
  • add k-mer counts dist. plots (7df4787)
  • add k-mer counts dist. plots (79427b4)
  • add k-mer counts dist. plots (c45c412)
  • add kGWASflow.py (698dcb8)
  • add new functions, update checkpoints + target outputs (6dac404)
  • add rules for converting BAM to BED (33ed058)
  • add rules for generating igv reports (igv-report) (2c4b4fe)
  • improve the kmers GWAS summary reports (9d5de9e)

Bug Fixes

  • change output, log paths and report caption (827dcad)
  • make the script compatible with new kmers GWAS summary reports (3dbecf0)
  • specify the spades version (35d5690)
  • update input file paths (05d7e6b)
  • update input, output and params paths (4637ed6)
  • update output directory paths + add touch (a0500c2)

Performance Improvements

  • update snakemake version to 7.25.0 (5b999c4)
  • update to fasterq-dump wrapper v1.23.5 (373b406)
  • update blast wrapper to v1.25.0 (3da03ba)
  • update to kmc 3.2.1 (c933fda)
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