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# Copyright (C) 2008 Assaf Gordon <[email protected]> | ||
# Copyright (C) 2008-2013 Assaf Gordon <[email protected]> | ||
# | ||
# This file is free software; as a special exception the author gives | ||
# unlimited permission to copy and/or distribute it, with or without | ||
|
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FASTX toolkit -- History of visible changes. | ||
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||
Copyright (C) 2008, Assaf Gordon <[email protected]> | ||
Copyright (C) 2008-2013, Assaf Gordon <[email protected]> | ||
See the end for copying conditions. | ||
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||
Please send FASTX toolkit bug reports to [email protected]. | ||
Please send FASTX toolkit bug reports to [email protected]. | ||
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Version 0.0.6 | ||
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@@ -12,7 +12,7 @@ Version 0.0.6 | |
------------------------------------------------------- | ||
Copying information: | ||
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Copyright (C) 2008, Assaf Gordon <[email protected]> | ||
Copyright (C) 2008-2013, Assaf Gordon <[email protected]> | ||
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Permission is granted to anyone to make or distribute verbatim copies | ||
of this document as received, in any medium, provided that the | ||
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@@ -271,4 +271,4 @@ ALL NECESSARY SERVICING, REPAIR OR CORRECTION. | |
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============= | ||
Please send all comments, suggestions, bug reports (or better yet - bug fixes) | ||
to [email protected] . | ||
to [email protected] . |
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# Copyright (C) 2008 Assaf Gordon <[email protected]> | ||
# Copyright (C) 2008-2013 Assaf Gordon <[email protected]> | ||
# | ||
# This file is free software; as a special exception the author gives | ||
# unlimited permission to copy and/or distribute it, with or without | ||
|
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# Copyright (C) 2008 Assaf Gordon <[email protected]> | ||
# Copyright (C) 2008-2013 Assaf Gordon <[email protected]> | ||
# | ||
# This file is free software; as a special exception the author gives | ||
# unlimited permission to copy and/or distribute it, with or without | ||
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@@ -10,7 +10,7 @@ | |
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AC_INIT([FASTX Toolkit], | ||
[0.0.14-rc1], | ||
[Assaf Gordon [email protected]], | ||
[Assaf Gordon [email protected]], | ||
[fastx_toolkit]) | ||
AC_CONFIG_AUX_DIR(config) | ||
AC_CONFIG_MACRO_DIR([m4]) | ||
|
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# Copyright (C) 2008 Assaf Gordon <[email protected]> | ||
# Copyright (C) 2008-2013 Assaf Gordon <[email protected]> | ||
# | ||
# This file is free software; as a special exception the author gives | ||
# unlimited permission to copy and/or distribute it, with or without | ||
|
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# Copyright (C) 2008 Assaf Gordon <[email protected]> | ||
# Copyright (C) 2008-2013 Assaf Gordon <[email protected]> | ||
# | ||
# This file is free software; as a special exception the author gives | ||
# unlimited permission to copy and/or distribute it, with or without | ||
|
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@@ -1,4 +1,4 @@ | ||
# Copyright (C) 2008 Assaf Gordon <[email protected]> | ||
# Copyright (C) 2008-2013 Assaf Gordon <[email protected]> | ||
# | ||
# This file is free software; as a special exception the author gives | ||
# unlimited permission to copy and/or distribute it, with or without | ||
|
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@@ -1,4 +1,4 @@ | ||
# Copyright (C) 2008 Assaf Gordon <[email protected]> | ||
# Copyright (C) 2008-2013 Assaf Gordon <[email protected]> | ||
# | ||
# This file is free software; as a special exception the author gives | ||
# unlimited permission to copy and/or distribute it, with or without | ||
|
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@@ -1,4 +1,4 @@ | ||
# Copyright (C) 2008 Assaf Gordon <[email protected]> | ||
# Copyright (C) 2008-2013 Assaf Gordon <[email protected]> | ||
# | ||
# This file is free software; as a special exception the author gives | ||
# unlimited permission to copy and/or distribute it, with or without | ||
|
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@@ -1,4 +1,4 @@ | ||
# Copyright (C) 2008 Assaf Gordon <[email protected]> | ||
# Copyright (C) 2008-2013 Assaf Gordon <[email protected]> | ||
# | ||
# This file is free software; as a special exception the author gives | ||
# unlimited permission to copy and/or distribute it, with or without | ||
|
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@@ -1,4 +1,4 @@ | ||
# Copyright (C) 2008 Assaf Gordon <[email protected]> | ||
# Copyright (C) 2008-2013 Assaf Gordon <[email protected]> | ||
# | ||
# This file is free software; as a special exception the author gives | ||
# unlimited permission to copy and/or distribute it, with or without | ||
|
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@@ -1,4 +1,4 @@ | ||
# Copyright (C) 2008 Assaf Gordon <[email protected]> | ||
# Copyright (C) 2008-2013 Assaf Gordon <[email protected]> | ||
# | ||
# This file is free software; as a special exception the author gives | ||
# unlimited permission to copy and/or distribute it, with or without | ||
|
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@@ -102,4 +102,4 @@ Use the **FASTA Collapser** tool to create FASTA files with multiplicity counts. | |
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</help> | ||
</tool> | ||
<!-- FASTA-Clipping-Histogram is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTA-Clipping-Histogram is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -88,4 +88,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
.. __: http://hannonlab.cshl.edu/fastx_toolkit/ | ||
</help> | ||
</tool> | ||
<!-- FASTQ-to-FASTA is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-to-FASTA is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -72,4 +72,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
.. __: http://hannonlab.cshl.edu/fastx_toolkit/ | ||
</help> | ||
</tool> | ||
<!-- FASTQ-to-FASTA is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-to-FASTA is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -85,4 +85,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTQ-Masker part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-Masker part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -52,4 +52,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTQ-Quality-Boxplot is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-Quality-Boxplot is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -97,4 +97,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTQ-Quality-Converter is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-Quality-Converter is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -84,4 +84,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
.. __: http://hannonlab.cshl.edu/fastx_toolkit/ | ||
</help> | ||
</tool> | ||
<!-- FASTQ-Quality-Filter is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-Quality-Filter is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -98,4 +98,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTX-Quality-Trimmer is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTX-Quality-Trimmer is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -90,4 +90,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
.. __: http://hannonlab.cshl.edu/fastx_toolkit/ | ||
</help> | ||
</tool> | ||
<!-- FASTQ-to-FASTA is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-to-FASTA is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -93,4 +93,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
.. __: http://hannonlab.cshl.edu/fastx_toolkit/ | ||
</help> | ||
</tool> | ||
<!-- FASTX-Artifacts-filter is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTX-Artifacts-filter is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -73,4 +73,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTX-barcode-splitter is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTX-barcode-splitter is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
2 changes: 1 addition & 1 deletion
2
galaxy/tools/cshl_custom_fastx_toolkit/fastx_barcode_splitter_galaxy_wrapper.sh
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#!/bin/sh | ||
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# FASTX-toolkit - FASTA/FASTQ preprocessing tools. | ||
# Copyright (C) 2009 A. Gordon ([email protected]) | ||
# Copyright (C) 2009-2013 A. Gordon ([email protected]) | ||
# | ||
# This program is free software: you can redistribute it and/or modify | ||
# it under the terms of the GNU Affero General Public License as | ||
|
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@@ -115,4 +115,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
</help> | ||
</tool> | ||
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||
<!-- FASTX-Clipper is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTX-Clipper is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -90,4 +90,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTX-Collapser is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTX-Collapser is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -49,4 +49,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTQ-Nucleotides-Distribution is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-Nucleotides-Distribution is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -36,4 +36,4 @@ This tool was created by Oliver Tam, based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTQ-Nucleotides-Distribution-Line is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-Nucleotides-Distribution-Line is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -110,4 +110,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTQ-Statistics is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-Statistics is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -185,4 +185,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTQ-Statistics is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-Statistics is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -72,4 +72,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
.. __: http://hannonlab.cshl.edu/fastx_toolkit/ | ||
</help> | ||
</tool> | ||
<!-- FASTX-renamer is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTX-renamer is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -66,4 +66,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTX-reverse-complement is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTX-reverse-complement is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -83,4 +83,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTX-Trimmer is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTX-Trimmer is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -79,4 +79,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTX-Trimmer-End is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTX-Trimmer-End is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -62,4 +62,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTX-Uncollapser is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTX-Uncollapser is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -73,4 +73,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTX-Uncollapser is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTX-Uncollapser is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -1,4 +1,4 @@ | ||
# Copyright (C) 2008 Assaf Gordon <[email protected]> | ||
# Copyright (C) 2008-2013 Assaf Gordon <[email protected]> | ||
# | ||
# This file is free software; as a special exception the author gives | ||
# unlimited permission to copy and/or distribute it, with or without | ||
|
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---|---|---|
|
@@ -101,4 +101,4 @@ Use the **FASTA Collapser** tool to create FASTA files with multiplicity counts. | |
|
||
</help> | ||
</tool> | ||
<!-- FASTA-Clipping-Histogram is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTA-Clipping-Histogram is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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|
@@ -87,4 +87,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
.. __: http://hannonlab.cshl.edu/fastx_toolkit/ | ||
</help> | ||
</tool> | ||
<!-- FASTQ-to-FASTA is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-to-FASTA is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -71,4 +71,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
.. __: http://hannonlab.cshl.edu/fastx_toolkit/ | ||
</help> | ||
</tool> | ||
<!-- FASTQ-to-FASTA is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-to-FASTA is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -84,4 +84,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
|
||
</help> | ||
</tool> | ||
<!-- FASTQ-Masker part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-Masker part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -51,4 +51,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTQ-Quality-Boxplot is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-Quality-Boxplot is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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</help> | ||
</tool> | ||
<!-- FASTQ-Quality-Converter is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-Quality-Converter is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -83,4 +83,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
.. __: http://hannonlab.cshl.edu/fastx_toolkit/ | ||
</help> | ||
</tool> | ||
<!-- FASTQ-Quality-Filter is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-Quality-Filter is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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</help> | ||
</tool> | ||
<!-- FASTX-Quality-Trimmer is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTX-Quality-Trimmer is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -81,4 +81,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
.. __: http://hannonlab.cshl.edu/fastx_toolkit/ | ||
</help> | ||
</tool> | ||
<!-- FASTQ-to-FASTA is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-to-FASTA is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -92,4 +92,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
.. __: http://hannonlab.cshl.edu/fastx_toolkit/ | ||
</help> | ||
</tool> | ||
<!-- FASTX-Artifacts-filter is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTX-Artifacts-filter is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -72,4 +72,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTX-barcode-splitter is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTX-barcode-splitter is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
2 changes: 1 addition & 1 deletion
2
galaxy/tools/fastx_toolkit/fastx_barcode_splitter_galaxy_wrapper.sh
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#!/bin/sh | ||
|
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# FASTX-toolkit - FASTA/FASTQ preprocessing tools. | ||
# Copyright (C) 2009 A. Gordon ([email protected]) | ||
# Copyright (C) 2009-2013 A. Gordon ([email protected]) | ||
# | ||
# This program is free software: you can redistribute it and/or modify | ||
# it under the terms of the GNU Affero General Public License as | ||
|
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@@ -114,4 +114,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
</help> | ||
</tool> | ||
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||
<!-- FASTX-Clipper is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTX-Clipper is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -89,4 +89,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTX-Collapser is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTX-Collapser is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -48,4 +48,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTQ-Nucleotides-Distribution is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-Nucleotides-Distribution is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -35,4 +35,4 @@ This tool was created by Oliver Tam, based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTQ-Nucleotides-Distribution-Line is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-Nucleotides-Distribution-Line is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -109,4 +109,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTQ-Statistics is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-Statistics is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -184,4 +184,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTQ-Statistics is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTQ-Statistics is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -72,4 +72,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
.. __: http://hannonlab.cshl.edu/fastx_toolkit/ | ||
</help> | ||
</tool> | ||
<!-- FASTX-renamer is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTX-renamer is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -65,4 +65,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTX-reverse-complement is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTX-reverse-complement is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -82,4 +82,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTX-Trimmer is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTX-Trimmer is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -78,4 +78,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTX-Trimmer-End is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTX-Trimmer-End is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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@@ -61,4 +61,4 @@ This tool is based on `FASTX-toolkit`__ by Assaf Gordon. | |
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</help> | ||
</tool> | ||
<!-- FASTX-Uncollapser is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> | ||
<!-- FASTX-Uncollapser is part of the FASTX-toolkit, by A.Gordon ([email protected]) --> |
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