Better checking for missing genotypes / phenotypes.

adriaan-vd-graaf · Sep 6, 2024 · 232cad9 · 232cad9
1 parent 6db37f0
commit 232cad9
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/mr_link_2_standalone.py b/mr_link_2_standalone.py
@@ -1344,7 +1344,7 @@ def maf_func(x):
     ld_matrix = np.corrcoef(genotypes.T)
 
     # it can happen that there are no SNPs available after this filter , we return None.
-    if genotypes.shape[1] == 0 or ld_matrix.shape[0] == 0:
+    if genotypes.shape[1] == 0:
         return None, None
 
     try: