Test

fix an error in indentation where output was written too early or a … #43

	name: Test
	on: [push, pull_request]
	jobs:
	test:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v2
	- name: Set up Python
	uses: actions/setup-python@v2
	with:
	python-version: '3.x'
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install numpy scipy pandas pytest bitarray duckdb pyarrow

	# Step to set up R
	- name: Install R
	uses: r-lib/actions/setup-r@v2

	# Step to install R packages
	- name: Install R dependencies
	run: \|
	Rscript -e 'install.packages(c("data.table", "coloc"), repos = "https://cloud.r-project.org/")'

	- name: Download and install plink
	run: \|
	PLINK_URL="https://s3.amazonaws.com/plink1-assets/plink_linux_x86_64_20231211.zip"
	wget -q $PLINK_URL -O plink_linux_x86_64.zip
	unzip plink_linux_x86_64.zip -d plink
	sudo mv plink/plink /usr/local/bin/
	rm -rf plink_linux_x86_64.zip plink

	- name: Run unit tests
	run: pytest tests/unit_tests_mr_link_2.py

	- name: Run integration tests
	run: pytest tests/integration_tests_mr_link_2.py

Provide feedback