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@YosefLab

Yosef Lab

Department of Systems Immunology, Weizmann Institute of Science

Pinned

  1. VISION VISION Public

    Signature Analysis and Visualization for Single-Cell RNA-seq

    R 145 28

  2. Cassiopeia Cassiopeia Public

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    Python 74 24

  3. Compass Compass Public

    In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

    Python 89 24

  4. Hotspot Hotspot Public

    Python 74 12

  5. epitome epitome Public

    Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility

    Python 10 5

Repositories

Showing 10 of 62 repositories
  • Compass Public

    In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

    YosefLab/Compass’s past year of commit activity
    Python 89 BSD-3-Clause 24 52 1 Updated Jun 23, 2024
  • pycea Public

    scverse lineage tracing analysis toolkit

    YosefLab/pycea’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jun 22, 2024
  • treedata Public

    anndata with trees

    YosefLab/treedata’s past year of commit activity
    Python 1 BSD-3-Clause 1 0 0 Updated Jun 22, 2024
  • mrvi-reproducibility Public

    Nextflow pipeline for MrVI pipelines

    YosefLab/mrvi-reproducibility’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 9 1 Updated Jun 21, 2024
  • scib-metrics Public

    Accelerated, Python-only, single-cell integration benchmarking metrics

    YosefLab/scib-metrics’s past year of commit activity
    Python 40 BSD-3-Clause 10 15 2 Updated Jun 18, 2024
  • scvi-tools-docker Public

    Docker images for scvi-tools

    YosefLab/scvi-tools-docker’s past year of commit activity
    Dockerfile 1 MIT 1 1 0 Updated Jun 17, 2024
  • velovi Public
    YosefLab/velovi’s past year of commit activity
    Python 35 BSD-3-Clause 7 8 2 Updated Jun 17, 2024
  • mrvi_archive Public

    Multi-resolution Variational Inference

    YosefLab/mrvi_archive’s past year of commit activity
    Python 22 BSD-3-Clause 6 2 1 Updated Jun 17, 2024
  • VISION Public

    Signature Analysis and Visualization for Single-Cell RNA-seq

    YosefLab/VISION’s past year of commit activity
    R 145 MIT 28 26 4 Updated Jun 10, 2024
  • Cassiopeia Public

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    YosefLab/Cassiopeia’s past year of commit activity
    Python 74 MIT 24 17 (3 issues need help) 6 Updated Jun 5, 2024
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