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@YangLab

YangLab

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  1. CLEAR Public

    direct comparison of circular and linear RNA expression

    Python 21 11

  2. RADAR Public

    RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.

    Perl 18 8

  3. CDCscreen Public

    Source code for the computational analysis of functional circular RNAs screening using the CRISPR-Cas13 system

    Shell 7 3

  4. CIRCexplorer2 Public

    circular RNA analysis toolset

    Python 81 45

  5. CIRCshapemapper Public

    Python 3 2

  6. SCAPTURE Public

    Shell 19 5

Repositories

Showing 10 of 23 repositories
  • YangLab.github.io Public
    CSS 0 0 0 0 Updated Apr 1, 2025
  • eTALED_computational_analysis Public
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 22, 2025
  • RtABE_computational_analysis Public

    Relevant code for analyzing the efficiency and off-target effects of RtABE.

    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 7, 2025
  • CIRCexplorer2 Public

    circular RNA analysis toolset

    Python 81 45 19 0 Updated Sep 8, 2024
  • DEMINING Public

    DEMINING: a stepwise computational framework to directly detect expressed DNA and RNA mutations in RNA deep sequencing data (DEMINING).

    Shell 7 3 5 0 Updated Jul 31, 2024
  • CIRCshapemapper Public
    Python 3 2 0 0 Updated Jan 19, 2024
  • SCAPTURE Public
    Shell 19 5 8 0 Updated Jan 9, 2024
  • Epitranscriptomic-maps-of-5-methylcytosine Public

    This is the bioinformatical analysis pipline associated with "Epitranscriptomic maps of 5-methylcytosine reveal substrate diversity of NSUN methyltransferases and links to mRNA translation and turnover"

    Shell 0 0 0 0 Updated Dec 29, 2023
  • CFBI Public

    CFBI is custom Perl and Shell scripts for base substitution and indel frequencies calculation.

    Perl 3 MIT 1 0 0 Updated Oct 8, 2023
  • RADAR Public

    RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.

    Perl 18 GPL-3.0 8 3 0 Updated Oct 8, 2023
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