🎨 rename snakemake workflow

Wytamma · Jan 29, 2024 · a6f7f52 · a6f7f52
1 parent 798d594
commit a6f7f52
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Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/snk/cli/workflow.py → snk/cli/snakemake_workflow.py b/snk/cli/workflow.py → snk/cli/snakemake_workflow.py
@@ -11,7 +11,7 @@
 import os
 
 
-def create_workflow(
+def create_snakemake_workflow(
     snakefile,
     cache=None,
     lint=None,

diff --git a/snk/cli/subcommands/env.py b/snk/cli/subcommands/env.py
@@ -7,7 +7,7 @@
 import typer
 
 from snk.cli.dynamic_typer import DynamicTyper
-from snk.cli.workflow import create_workflow
+from snk.cli.snakemake_workflow import create_snakemake_workflow
 from snk.workflow import Workflow
 from rich.console import Console
 from rich.syntax import Syntax
@@ -28,7 +28,7 @@ def __init__(
         self.snakemake_config = snakemake_config
         self.snakefile = snakefile
         self.configfile = get_config_from_workflow_dir(self.workflow.path)
-        self.snakemake_workflow = create_workflow(
+        self.snakemake_workflow = create_snakemake_workflow(
             self.snakefile,
             config=self.snakemake_config,
             configfiles=[self.configfile] if self.configfile else None,

diff --git a/snk/cli/subcommands/script.py b/snk/cli/subcommands/script.py
@@ -6,7 +6,7 @@
 import typer
 
 from snk.cli.dynamic_typer import DynamicTyper
-from snk.cli.workflow import create_workflow
+from snk.cli.snakemake_workflow import create_snakemake_workflow
 from snk.workflow import Workflow
 from rich.console import Console
 from rich.syntax import Syntax
@@ -117,7 +117,7 @@ def run(
         cmd = [executor, str(script_path)] + args
         if env:
             env_path = self._get_conda_env_path(env)
-            workflow = create_workflow(
+            workflow = create_snakemake_workflow(
                 self.snakefile,
                 config=self.snakemake_config,
                 configfiles=[self.configfile] if self.configfile else None,