✨ add short flags

snk/cli/dynamic_typer.py

@@ -1,9 +1,7 @@
-from typing import Callable
 import typer
 from typing import List, Callable
 from inspect import signature, Parameter
 from makefun import with_signature
-import typer
 
 from snk.cli.options import Option
 
@@ -121,6 +119,7 @@ def _create_cli_parameter(self, option: Option):
             kind=Parameter.POSITIONAL_OR_KEYWORD,
             default=typer.Option(
                 ... if option.required else option.default,
+                *[f"--{option.name.replace('_', '-')}", f"-{option.short}"] if option.short else [],
                 help=f"[CONFIG] {option.help}",
             ),
             annotation=option.type,

snk/cli/options/option.py

@@ -11,3 +11,4 @@ class Option:
     help: str
     type: Any
     required: bool
+    short: str

snk/cli/options/utils.py

@@ -53,6 +53,7 @@ def create_option_from_annotation(
         help=annotation_values.get(f"{annotation_key}:help", ""),
         type=annotation_type,
         required=annotation_values.get(f"{annotation_key}:required", False),
+        short=annotation_values.get(f"{annotation_key}:short", None),
     )
 
 

tests/data/pipeline/snk.yaml

@@ -1,4 +1,9 @@
 annotations:
+  no_run:
+    default: False
+    type: bool
+    help: "A boolean to test"
+    short: b
   null_annotation:
     default: null
   times: 

tests/data/pipeline/workflow/Snakefile

@@ -1,5 +1,7 @@
 configfile: "config.yaml"
 
+print(config)
+
 rule hello_world:
     output: config['output']
     params:

tests/snk/test_snk_config.py

@@ -9,6 +9,7 @@ def test_snk_config_creation():
     assert snk_config.resources == []
     assert snk_config.cli == {}
     assert snk_config.symlink_resources == False
+    assert snk_config.version == None
 
 
 def test_validate_resources_with_existing_files(tmp_path):