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🎨 add paper to links
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Wytamma authored Jan 28, 2025
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**Source Code**: <a href="https://github.com/Wytamma/snk" target="_blank">https://github.com/Wytamma/snk</a>

**Paper**: <a href="[https://github.com/Wytamma/snk](https://joss.theoj.org/papers/10.21105/joss.0741)" target="_blank">https://joss.theoj.org/papers/10.21105/joss.07410</a>

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Snk (pronounced snek) is a Snakemake workflow management system. Snk allows you to install Snakemake workflows as dynamically generated Command Line Interfaces (via [snk-cli](https://github.com/Wytamma/snk-cli)). Using a workflow as a CLI increases its interoperability and allows complex workflows to be used as modular components in a larger system.
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title = {Snk: A Snakemake CLI and Workflow Management System},
journal = {Journal of Open Source Software}
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