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WeissShahaf/README.md

🚀 Ready to Advance Your Research?

Get Expert Guidance for Your Neural Data Challenges

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🎯 How I Accelerate Your Research

💻 Scalable Analysis Pipelines

Transform Manual Analysis into Automated pipelines

  • Custom Python/MATLAB workflows

🎓 Expert Knowledge Transfer

Build Your Team's Advanced Analysis Capabilities

  • Hands-on training in spike sorting, signal processing, behavior quantification, video analysis
  • Custom workshops for research teams and technical staff
  • Specialties: Comparative vertebrate anatomy, neuroanatomy, debugging complex pipelines

who am I?

🧠 Shahaf Weiss. A published Researcher, 🎓 PhD Neuroscience , 15+ Years Ephys Analysis

  • Neuroscience Consultant & Electrophysiology Expert,founder of Rent-A-Spike consulting

  • I help labs tackle the common Ephys problems that could make or break a project



you can contact me at [email protected]



I offer the following services:

Consulting



ChatGPT Image Sep 17, 2025, 04_30_41 PM
* 🥼 Designing behavioral arenas, experimental devices, silicone probes, 3D printed drives and protection caps

* 📝 Designing novel analysis workflows and pipelines
* 💡 Troubleshooting existing experiments and code pipelines

Scientific Programming


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  • 📝 Intergrating behavior and neural datasets.
  • ⛓ Data analysis Pipelines





Teaching & project focused technical instructions


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  • ⚡Spike sorting
  • 🔌 Denoising , 🪲 debugging
  • 👁️ Comparative vertabrate anatomy
  • 🧠 Neuroanatomy





Tech Stack: some tools we have used in previous projects 🛠️

Languages

Python

Python

MATLAB

MATLAB

C#

C#

Python Libraries & Frameworks

🐍 Python Ecosystem

Category Technologies
🧠 ML/DL PyTorch TensorFlow scikit-learn RAPIDS
🔬 Neuroscience DeepLabCut SLEAP Pynapple Spikeinterface
📊 Data Analysis pandas Polars cuDF CuPy SciPy HDBSCAN
📊 Parallel processing AsyncIO joblib
📹 Video OpenCV FFmpeg
🌐 Web FastAPI NiceGUI
🖥️ GUI Tkinter PySide6 PyQt NiceGUI
🐍 Virtual Environments Anaconda Mamba uv
🧪 Unit Tests pytest

🕓 Version Control

Git GitHub

💻 Operating Systems

Ubuntu Windows 11 WSL)

Popular repositories Loading

  1. LizardPlusMaze LizardPlusMaze Public archive

    lizard plus maze arena experiment control

    C++

  2. Kilosort2-ks2_large_template Kilosort2-ks2_large_template Public

    modified from: https://github.com/jenniferColonell/Kilosort2/tree/ks2_large_template

    MATLAB

  3. spikes spikes Public

    Forked from cortex-lab/spikes

    cortex lab code for electrophysiology

    MATLAB

  4. ironclust ironclust Public

    Forked from flatironinstitute/ironclust

    Spike sorting software being developed at Flatiron Institute, based on JRCLUST (Janelia Rocket Cluster)

    Jupyter Notebook

  5. 3D-printed-cap---for-lizard-chornic-implants 3D-printed-cap---for-lizard-chornic-implants Public

    3D printed cap - for lizard chornic implants

  6. lizard_sleap lizard_sleap Public

    SLEAP project for pose estimation of naive and chonicially implanted bearded dragon lizards