Updated Whats New with score preprint

docs/source/DocumentationSummary.md

@@ -19,14 +19,23 @@ Detailed case study in using HED-3G for tagging:
 > NeuroImage Special Issue Practice in MEEG. NeuroImage  245  (2021)  118766.  
 > [https://www.sciencedirect.com/science/article/pii/S1053811921010387](https://www.sciencedirect.com/science/article/pii/S1053811921010387).
 
+### Preprints
+
+Hierarchical Event Descriptor library schema for EEG data annotation:
+
+> Pal Attia, T., Robbins, K., Beniczky, S., Bosch-Bayard, J., Delorme, A., Lundstrom, B., Rogers, C., Rampp, S.,   
+>  Valdes-Sosa, P., Truong, D., Worrell, G., Makeig, S., and D. Hermes (2023).    
+> [**https://arxiv.org/abs/2310.15173**](https://arxiv.org/abs/2310.15173).  
+> DOI:10.48550/arXiv.2310.15173.  
+
 Framework for annotating and analyzing events in context:
 
 > Makeig, S. and K. Robbins (2023 under review).  
 > Events in context - A framework for the study of brain, experience and behavior.
 > **Preprint**: [**https://psyarxiv.com/e7jbm**](https://psyarxiv.com/e7jbm)  
-> DOI: 10.31234/osf.io/e7jbm   
+> DOI: 10.31234/osf.io/e7jbm.   
 
-### Book chapters
+### Book chapters (preprints)
 
 >  Truong, D., Robbins, K., Delorme, A., and S. Makeig (in press).  
 > End-to-end processing of M/EEG data with BIDS, HED, and EEGLAB.  

docs/source/WhatsNew.md

@@ -4,6 +4,11 @@
 <span style="color: red; font-weight: bold;">Upcoming... </span> **Nov. 10-17, 2023 sFN (Society for Neuroscience)** in Washington D.C.:  
 > **Visit SCCN booth (#3031)** for help and information (or just to visit) about **NEMAR/OpenNeuro**, **EEGLAB**, **HED**, **LSL**, and **MoBI**.  
 
+**October 4, 2023**: **New HED preprint Score HED library**
+> <em>Hierarchical Event Descriptor library schema for EEG data annotation</em>  
+> by Pal Attia, T., Robbins, K., Beniczky, S., Bosch-Bayard, J., Delorme, A., Lundstrom, B., Rogers, C., Rampp, S., Valdes-Sosa, P., Truong, D., Worrell, G., Makeig, S., and D. Hermes (2023).    
+> **Preprint**: [**https://arxiv.org/abs/2310.15173**](https://arxiv.org/abs/2310.15173).  
+> DOI:10.48550/arXiv.2310.15173.  
 
 **September 20, 2023 16:00 CEST**: **INCF Workshop on HED and BIDS**
 > <em>Event annotation in neuroimaging using HED: from experiment to analysis</em>  

hedcode/jupyter_notebooks/bids/validate_bids_dataset.ipynb

@@ -32,15 +32,21 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
+   "execution_count": 3,
    "outputs": [
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
       "Using HEDTOOLS version: {'date': '2023-10-12T10:29:43-0500', 'dirty': True, 'error': None, 'full-revisionid': 'e9e63e39f6a99487c5e69ae96e653c4580045ec0', 'version': '0.3.0+164.ge9e63e3.dirty'}\n",
-      "HED Examples version: {'version': '0.2.0+173.g63d5080.dirty', 'full-revisionid': '63d50808c4c7e97bdfc89076cb19af9e13252057', 'dirty': True, 'error': None, 'date': '2023-10-23T11:09:31-0500'}\n",
-      "No HED validation errors\n"
+      "HED Examples version: {'version': '0.2.0+177.g642dd60.dirty', 'full-revisionid': '642dd607a2fa508f64985afaa8a040b31023ee92', 'dirty': True, 'error': None, 'date': '2023-10-24T15:09:52-0500'}\n",
+      "HED validation errors: \n",
+      "\n",
+      "Errors in file 'sub-02_ses-01_task-DriveRandomSound_run-1_events.tsv'\n",
+      "\tIssues in row 2833:\n",
+      "\t\thed string: (Def/Non-cue-sound, Onset),(Def/Drive-vehicle, Offset),(Def/Trial-marker, Offset),(Def/Non-cue-sound, Offset),(Def/Show-speed-sign/45, Offset)\n",
+      "\t\t\tONSET_OFFSET_INSET_ERROR: 'Offset' uses name 'Non-cue-sound', which was already used at this onset time.  Problem spans string indexes: 102, 108\n",
+      "\t\t\tONSET_OFFSET_INSET_ERROR: Offset tag 'Def/Show-speed-sign/45' does not have a matching onset.  Problem spans string indexes: 111, 133\n"
      ]
     }
    ],
@@ -55,8 +61,8 @@
     "\n",
     "## Set the dataset location and the check_for_warnings flag\n",
     "check_for_warnings = False\n",
-    "dataset_path = 't:/summaryTests/ds002718-download'\n",
-    "outfile = 't:/ds002718_errors.txt'\n",
+    "dataset_path = 't:/summaryTests/ds004105-download'\n",
+    "outfile = 't:/ds004105_errors.txt'\n",
     "## Validate the dataset\n",
     "bids = BidsDataset(dataset_path)\n",
     "issue_list = bids.validate(check_for_warnings=check_for_warnings)\n",
@@ -72,8 +78,8 @@
    "metadata": {
     "collapsed": false,
     "ExecuteTime": {
-     "end_time": "2023-10-24T18:51:33.095713100Z",
-     "start_time": "2023-10-24T18:51:31.396158Z"
+     "end_time": "2023-10-24T22:15:17.741340200Z",
+     "start_time": "2023-10-24T22:14:12.987247500Z"
     }
    }
   }

hedcode/matlab_scripts/web_services/runAllTests.m

@@ -1,6 +1,6 @@
 host = 'https://hedtools.org/hed';
 host = 'https://hedtools.org/hed_dev';
-%host = 'http://127.0.0.1:5000';
+host = 'http://127.0.0.1:5000';
 
 
 errorMap = containers.Map('KeyType', 'char', 'ValueType', 'any');