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  1. i-ADHoRe i-ADHoRe Public

    i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.

    C++ 17 4

  2. ksrates ksrates Public

    ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-ortholog Ks distributions.

    Python 16 9

  3. MINI-EX MINI-EX Public

    Motif-Informed Network Inference of cell type-specific gene regulatory networks in plants

    Python 15 8

  4. MINI-AC MINI-AC Public

    Motif-Informed Network Inference based on Accessible Chromatin (MINI-AC) is a method that combines accessible chromatin data from bulk or single-cell experiments with transcription factor binding s…

    Python 6

  5. trapid trapid Public

    TRAPID is a web application for the analysis of de novo transcriptomes

    PHP 3 2

  6. PlantRRBS PlantRRBS Public

    Code base for RRBS and WGBS analyzes in Plants

    Shell 2 1

Repositories

Showing 10 of 13 repositories
  • MINI-EX Public

    Motif-Informed Network Inference of cell type-specific gene regulatory networks in plants

    VIB-PSB/MINI-EX’s past year of commit activity
    Python 15 8 0 0 Updated Dec 19, 2024
  • cross_species_annotation_transfer Public

    Framework for transferring single-cell cluster annotations cross-species

    VIB-PSB/cross_species_annotation_transfer’s past year of commit activity
    Python 0 0 0 0 Updated Dec 19, 2024
  • wheat_root_atlas Public
    VIB-PSB/wheat_root_atlas’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 19, 2024
  • MINI-AC Public

    Motif-Informed Network Inference based on Accessible Chromatin (MINI-AC) is a method that combines accessible chromatin data from bulk or single-cell experiments with transcription factor binding site enrichment to learn gene regulatory networks in plants

    VIB-PSB/MINI-AC’s past year of commit activity
    Python 6 0 5 1 Updated Jul 31, 2024
  • ksrates Public

    ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-ortholog Ks distributions.

    VIB-PSB/ksrates’s past year of commit activity
    Python 16 GPL-3.0 9 1 2 Updated Jun 28, 2024
  • i-ADHoRe Public

    i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.

    VIB-PSB/i-ADHoRe’s past year of commit activity
    C++ 17 AGPL-3.0 4 8 0 Updated Jun 28, 2024
  • OrthoMCLight Public

    OrthoMCLight is an edited version of OrthoMCL v1.4 that requires less memory and has a faster runtime. It is a genome-scale algorithm for grouping orthologous protein sequences.

    VIB-PSB/OrthoMCLight’s past year of commit activity
    Perl 0 GPL-3.0 0 0 0 Updated Apr 19, 2024
  • trapid Public

    TRAPID is a web application for the analysis of de novo transcriptomes

    VIB-PSB/trapid’s past year of commit activity
    PHP 3 2 0 0 Updated Oct 30, 2023
  • vHRR Public

    vHRR: co-expression based gene function prediction

    VIB-PSB/vHRR’s past year of commit activity
    Python 1 GPL-3.0 0 1 0 Updated Apr 28, 2023
  • tomato_motif_enrichment Public
    VIB-PSB/tomato_motif_enrichment’s past year of commit activity
    Python 1 0 0 0 Updated Sep 23, 2022
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