Popular repositories Loading

1. build-sourmash-index build-sourmash-index Public

   Build a database of sourmash signatures from a genomic library.

   Nextflow 2

2. sra-demo-benchmark sra-demo-benchmark Public

   A demo workflow showing download, extraction, and compression of sequences from SRA.

   HTML 1

3. shotgun-qc-nf shotgun-qc-nf Public archive

   A nextflow pipeline definition for generating quality control reports for shotgun metagenomic sequences.

   Nextflow

4. bracken-nf bracken-nf Public archive

   Map metagenomic reads to operational taxonomic units (OTUs) using kraken2 and estimate bacterial abundances with bracken.

   Nextflow

5. kraken2-humgut kraken2-humgut Public archive

   Build a kraken2 database and bracken mappings from the HumGut genome clusters.

   Nextflow

6. Comparison_of_DA_microbiome_methods Comparison_of_DA_microbiome_methods Public archive

   Forked from nearinj/Comparison_of_DA_microbiome_methods

   R