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UPPMAX · May 21, 2024 · c1a835a · c1a835a
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diff --git a/docs/intermediate/ides.md b/docs/intermediate/ides.md
@@ -1,10 +1,10 @@
 # IDE:s
 
-![](./img/rstudio_in_action_480_x_270.png)
+![RStudio running on Bianca](./img/rstudio_in_action_480_x_270.png)
 
 > RStudio is one of the IDEs that can be used on Bianca.
 
-!!! info "Objectives" 
+!!! info "Objectives"
 
     - Observe different IDEs running on Bianca
     - Start your favorite IDE on Bianca

diff --git a/docs/intermediate/intro.md b/docs/intermediate/intro.md
@@ -1,18 +1,18 @@
 # Bianca In-Depth Hackathon: Improve Your Handling of Sensitive Research Data
 
-Are you already working with sensitive data in your research 
-and feel your workflow can be improved? 
-If yes, welcome to a full day of learning of smarter ways 
-to work on the Bianca UPPMAX cluster. 
+Are you already working with sensitive data in your research
+and feel your workflow can be improved?
+If yes, welcome to a full day of learning of smarter ways
+to work on the Bianca UPPMAX cluster.
 
 ???- tip "I am new to Bianca, where do I start?"
 
     As a beginner, you are encouraged to start with the
     basic Bianca course, at [here](../intro.md).
 
-You will learn how to login from a terminal (bypassing ThinLinc), 
-do file transfer from a terminal (allowing scripts), 
-advanced SLURM, using IDEs (i.e. RStudio and/or VSCode), 
+You will learn how to login from a terminal (bypassing ThinLinc),
+do file transfer from a terminal (allowing scripts),
+advanced SLURM, using IDEs (i.e. RStudio and/or VSCode),
 and installing custom software and packages.
 
 Tentative schedule
@@ -59,15 +59,15 @@ When | Who  | What
 15:45| All  | Optional Q/A and [extra material](https://uppmax.github.io/bianca_workshop/extra/slurm/)
 16:00| .    | END
 
- * Who: `B`: Björn, `L`: Lars, `P`: Pavlin, `R`: Richèl
+* Who: `B`: Björn, `L`: Lars, `P`: Pavlin, `R`: Richèl
 
 Changes:
 
-- IDEs changed from 55 -> 45 minutes, as there is a new setup: (1) let learners vote on one IDE, (2) discuss that IDE in detail, (3) mention the others more briefly. If teachers think it would be better to discuss 2 in detail, they may do so
-- NAISS-SENS to back, so that (1) learners can dive in immediately, (2) it is a nice easy way to round off the day
-- NAISS-SENS duration changed from 10 -> 30 minutes, as this is more realistic
-- Introduction duration changed from 5 -> 15 minutes
-- Transferring files part 1 duration changed from 40 -> 45 minutes
+* IDEs changed from 55 -> 45 minutes, as there is a new setup: (1) let learners vote on one IDE, (2) discuss that IDE in detail, (3) mention the others more briefly. If teachers think it would be better to discuss 2 in detail, they may do so
+* NAISS-SENS to back, so that (1) learners can dive in immediately, (2) it is a nice easy way to round off the day
+* NAISS-SENS duration changed from 10 -> 30 minutes, as this is more realistic
+* Introduction duration changed from 5 -> 15 minutes
+* Transferring files part 1 duration changed from 40 -> 45 minutes
 
 !!! info "Q/A collaboration document"
 

diff --git a/docs/intermediate/overview2.md b/docs/intermediate/overview2.md
@@ -10,11 +10,11 @@
 
 - [Vetenskapsrådet](https://www.vr.se) ('Science counsel', VR) is biggest funder
   of research in Sweden and funds HPC infrastructure
-- [**National Academic Infrastructure for Supercomputing in Sweden**](https://www.naiss.se/) (NAISS) 
-  provides HPC infrastructure: computing power, storage and data services. 
-  Apply [here](https://www.naiss.se//#application-rounds-for-compute-and-storage-resources) 
+- [**National Academic Infrastructure for Supercomputing in Sweden**](https://www.naiss.se/) (NAISS)
+  provides HPC infrastructure: computing power, storage and data services.
+  Apply [here](https://www.naiss.se//#application-rounds-for-compute-and-storage-resources)
   for compute and storage
-- [Uppsala Multidisciplinary Center for Advanced Computational Science](https://www.uppmax.uu.se/) (**UPPMAX = UppMACS**) 
+- [Uppsala Multidisciplinary Center for Advanced Computational Science](https://www.uppmax.uu.se/) (**UPPMAX = UppMACS**)
   provides HPC infrastructure in Uppsala
 
 ```mermaid
@@ -86,16 +86,16 @@ flowchart TD
 
 - UPPMAX cloud:
       called 'Dis' (the Swedish word for 'haze'), it is
-      the `EAST-1` region of the SNIC science cloud. 
+      the `EAST-1` region of the SNIC science cloud.
 
 ## High Performance Computing — HPC
 
 ### What is a cluster?
 
 - A network of computers, each computer working as a **node**.
 
-- From small scale RaspberryPi cluster... 
-     
+- From small scale RaspberryPi cluster...
+
 ![RaspBerry](./img/IMG_5111.jpeg){ width="400" }
 
 - To supercomputers like Rackham.
@@ -108,27 +108,13 @@ flowchart TD
 
 - The user logs in to **login nodes** via Internet through ssh or ThinLinc.
 
-  - Here the file management and lighter data analysis can be performed.
+    - Here the file management and lighter data analysis can be performed.
 
 ![RaspBerry](./img/nodes.png)
 
 ![RaspBerry](./img/Bild1.png){ width="400" }
 
-- The **calculation nodes** have to be used for intense computing. 
-
-## Summary about the three "common" UPPMAX clusters
-
-| |Rackham|Snowy|Bianca|
-|-------|-----|------|---|
-|**Purpose**|General-purpose|General-purpose|Sensitive|
-|**#  Nodes (Intel)**|486+144|228+ <br>50 Nvidia T4 GPUs|288 +  <br>10 nodes á 2 <br>NVIDIA A100 GPUs|
-|**Cores per node**|20/16|16|16/64|
-|**Memory per node**|128 GB|128 GB|128 GB
-|**Fat nodes**|256 GB & 1 TB| 256, 512 GB & 4 TB| 256 & 512 GB|
-|**Local disk (scratch)**|2/3 TB| 4 TB| 4 TB |
-|**Login nodes**|Yes| No (reached from Rackham)|Yes (2 cores and 15 GB)|
-|**"Home" storage**|Domus|Domus|Castor|
-|**"Project" Storage**|Crex, Lutra|Crex, Lutra|Castor|
+- The **calculation nodes** have to be used for intense computing.
 
 ## Overview of the UPPMAX systems
 
@@ -165,8 +151,7 @@ flowchart TD
 
 
 !!! abstract "keypoints"
-    - NAISS makes available large-scale high-performance computing resources, storage capacity, and advanced user support, for Swedish research. 
+    - NAISS makes available large-scale high-performance computing resources, storage capacity, and advanced user support, for Swedish research.
     - UPPMAX runs the local resources placed at Uppsala University
     - A cluster consists of several inter-connected computers that can work individually or together.
 
-
diff --git a/docs/intermediate/summary.md b/docs/intermediate/summary.md
@@ -10,7 +10,7 @@
 - **Overview of UPPMAX systems**
 
     - NAISS-SENS
-    - Several clusters, like 
+    - Several clusters, like
 
         - Bianca
         - Rackham
@@ -28,9 +28,9 @@
     - The ``wharf`` works like a dock at the harbour.
     - There are several ways to use the ``wharf`` to transfer files
 
-      - copy
-      - transit server
-      - rsync, scp/sftp
+        - copy
+        - transit server
+        - rsync, scp/sftp
 
 - **Introduction to compute nodes**
 
@@ -39,7 +39,7 @@
         - Slurm, sbatch, the job queue
         - Jobs
         - Slurm parameters
-        - Interactive jobs 
+        - Interactive jobs
 
             - allows you to work interactively with command line and your tools but on a compute node.
 
@@ -70,11 +70,11 @@
     - RStudio
 
         - Run in interactive session
- 
+
     - Jupyter
- 
+
         - Run in interactive session
- 
+
     - VSCodium
 
         - Run in interactive session
diff --git a/scripts/fix_markdown_style_errors.sh b/scripts/fix_markdown_style_errors.sh
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+markdownlint --fix "**/docs/intermediate/ides.md"
+markdownlint --fix "**/docs/intermediate/overview2.md"
+markdownlint --fix "**/docs/intermediate/intro.md"
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