Merge branch 'main' of https://github.com/UPPMAX/bianca_workshop

docs/extra/conda.md

@@ -194,7 +194,7 @@ following channels available:
  - Do a `conda clean -a` once in a while to remove unused and unnecessary files
 
 
-- [More info about Conda on UPPMAX](https://uppmax.uu.se/support/user-guides/conda-user-guide/)
+- [More info about Conda on UPPMAX](http://docs.uppmax.uu.se/cluster_guides/conda/)
 
 ## Working with Conda environments defined by files
 

docs/extra/devel.md

@@ -23,9 +23,9 @@
 - To build from source use a compiler module
 - We have several compiler versions from GNU and INTEL
 - check with: ``$ ml avail gcc`` and ``$ ml avail intel``
-- [Guide for compiling **serial** programs](https://www.uppmax.uu.se/support/user-guides/compiling-source-code/){:target="_blank"}
-- [Guide for compiling **parallel** programs](https://www.uppmax.uu.se/support/user-guides/mpi-and-openmp-user-guide/){:target="_blank"}
- - [Available **combinations** of compilers and parallel libraries](https://www.uppmax.uu.se/support/user-guides/mpi-and-openmp-user-guide/#tocjump_48302061903476823_2){:target="_blank"}
+- [Guide for compiling **serial** programs](http://docs.uppmax.uu.se/cluster_guides/compiling_serial/){:target="_blank"}
+- [Guide for compiling **parallel** programs](http://docs.uppmax.uu.se/cluster_guides/compiling_parallel/){:target="_blank"}
+ - [Available **combinations** of compilers and parallel libraries](http://docs.uppmax.uu.se/cluster_guides/compiling_parallel/#mpi-using-the-openmpi-library){:target="_blank"}
 
 ## Git on Bianca
 

docs/overview.md

@@ -75,7 +75,7 @@ There are three types of UPPMAX systems:
 
 Computing systems allow a user to do heavier computational calculations.
 
-[UPPMAX has, among others, the following clusters](https://www.uppmax.uu.se/resources/systems/):
+[UPPMAX has, among others, the following clusters](https://www.uu.se/en/centre/uppmax/resources/clusters):
 
 - Rackham: regular data, general purpose
 - Snowy: regular data, long runs and GPU:s
@@ -111,7 +111,7 @@ for either active use (i.e. in calculations) or to archive it.
 Storage for active use is also called 'on-load' storage,
 where archived data is called 'off-load' storage.
 
-The [UPPMAX storage systems](https://www.uppmax.uu.se/resources/systems/storage-systems/) are:
+The [UPPMAX storage systems](https://www.uu.se/en/centre/uppmax/resources/storage) are:
 
 - On-load: Castor for Bianca, Crex for Rackham
 - Off-load: Lutra for Rackham
@@ -136,7 +136,7 @@ flowchart TD
 Cloud services allow a user to have something active (typically a website)
 that can be accessed by the internet.
 
-For this, the [UPPMAX cloud](https://www.uppmax.uu.se/resources/systems/the-uppmax-cloud/)
+For this, the [UPPMAX cloud](https://www.uu.se/en/centre/uppmax/resources/clusters/cloud-service-dis)
 has a service called 'Dis' (the Swedish word for 'haze') and is part of
 the `EAST-1` region of the SNIC science cloud. 
 

docs/transfer_basics.md

@@ -25,7 +25,7 @@
  - Therefore, it serves as a bridge between Internet and Bianca.
 
 ## Data transfers:
-- <https://www.uppmax.uu.se/support/user-guides/bianca-user-guide/> 
+- <http://docs.uppmax.uu.se/cluster_guides/transfer_bianca/> 
  - section 3: Transfer files to and from Bianca
 
 ### The `wharf` location on Bianca
@@ -83,7 +83,7 @@ Be sure to really use a SFTP client -- not just a SCP client.
 
 ## Using standard sftp client (command line)
 ---
-<https://www.uppmax.uu.se/support/user-guides/basic-sftp-commands/>
+<http://docs.uppmax.uu.se/cluster_guides/sftp_with_bianca/>
 
 ```bash
 $ sftp -q <username>-<projid>@bianca-sftp.uppmax.uu.se