forked from HongfanChen/PertGD
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy path.Rhistory
97 lines (97 loc) · 2.64 KB
/
.Rhistory
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
devtools::check()
devtools::check()
devtools::install_github('umich-biostatistics/AEenrich')
library(AEenrich)
covid1
?enrich
?count_cases
library(tidyverse)
?mutate()
?enrich
?glm
?enrich
?count_cases
?AEenrich
?covid1
covid1
covid2
group
library(AEenrich)
covid1
res = count_cases(data = covid1, drug.case = "COVID19", drug.control = "OTHER",
covar_cont = c("AGE"), covar_disc = c("SEX"),
breaks = list(c(16,30,50,65,120)))
count_cases
?count_cases
enrich
enrich(data = covid1, covar = c("SEX", "AGE"), p = 0, method = "aeks",
n_perms = 1000, drug.case = "COVID19", dd.group = group, cores = 2,
drug.control = "OTHER", min_size = 5, min_AE = 10, zero = FALSE)
enrich(data = covid1, covar = c("SEX", "AGE"), p = 0, method = "aeks",
n_perms = 1000, drug.case = "COVID19", dd.group = group,
drug.control = "OTHER", min_size = 5, min_AE = 10, zero = FALSE)
enrich(data = covid2, covar = c("SEX", "AGE"), p = 0, method = "aeks",
n_perms = 1000, drug.case = "DrugYes", dd.group = group,
drug.control = "DrugNo", min_size = 5, min_AE = 10)
enrich(data = covid1, covar = c("SEX", "AGE"), p = 0, method = "aefisher",
n_perms = 1000, drug.case = "COVID19", dd.group = group,
drug.control = "OTHER", min_size = 5, min_AE = 10, q.cut = 0.05,
or.cut = 1.5)
enrich(data = covid2, covar = c("SEX", "AGE"), p = 0, method = "aefisher",
n_perms = 1000, drug.case = "DrugYes", dd.group = group,
drug.control = "DrugNo", min_size = 5, min_AE = 10)
count_cases
devtools::document()
warnings()
devtools::load_all()
warnings()
devtools::check()
devtools::document()
devtools::document()
devtools::load_all()
devtools::check()
devtools::install_github('umich-biostatistics/AEenrich')
library(AEenrich)
?count_cases()
library(AEenrich)
?count_cases()
?count_cases
?enrich
library(AEenrich)
?count_cases
?enrich
?count_cases
?enrich
?count_cases
devtools::document
devtools::document()
devtools::load_all()
devtools::check()
devtools::install_github('umich-biostatistics/AEenrich')
library(AEenrich)
remove.packages("AEenrich")
library(AEenrich)
devtools::install_github('umich-biostatistics/AEenrich')
library(AEenrich)
?enrich
?count_cases
?enrich
covid1
covid2
group
?count_cases
count_cases(data = covid1, drug.case = "COVID19", drug.control = "OTHER",
covar_cont = c("AGE"), covar_disc = c("SEX"),
breaks = list(c(16,30,50,65,120)))
devtools::document()
devtools::load_all()
devtools::check()
remove.packages("AEenrich")
devtools::install_github('umich-biostatistics/AEenrich')
library(AEenrich)
?count_cases()
count_cases(data = covid1, drug.case = "COVID19", drug.control = "OTHER",
covar_cont = c("AGE"), covar_disc = c("SEX"),
breaks = list(c(16,30,50,65,120)))
install.packages("badger")
install.packages('devtools')