mycoSORT: user friendly updated version

TsangLab · May 29, 2015 · ee817fc · ee817fc
1 parent e99b908
commit ee817fc
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Showing 24 changed files with 18 additions and 5,219 deletions.
diff --git a/config-sample.cfg b/config-sample.cfg
@@ -7,14 +7,11 @@
 ##################################################
 ########################### DIRECTORIES ##########
 # project home
-HOME_DIR=/.
+HOME_DIR=/home/usr/mycosort-pck-version/
 #
 # corpus directory
 CORPUS_DIR=corpus/
 #
-# source documents directory
-SOURCE_DIR=src/
-#
 # duplicate documents directory 
 DUP_DIR=test/
 #
@@ -37,6 +34,23 @@ FEATURE_DIR=features/
 OUTPUT_MODEL=arff/
 #
 #################################################
+###################### CORPUS SAMPLING ##########
+# true if training set must be sampled
+SAMPLE_TRAIN=false
+#
+# true if test set must be sampled
+SAMPLE_TEST=false
+#
+# % of test corpus WRT the collection  
+PERCT_TEST=15
+#
+# % positive on training set
+PERCT_POS_TRAIN=50
+#
+# % positive on test set 
+PERCT_POS_TEST=10
+#
+#################################################
 ########################## INPUT FILES ##########
 # training file
 TRAINING_FILE=/triagecorpus_train.xml

diff --git a/jar/README b/jar/README
diff --git a/jar/README~ b/jar/README~
diff --git a/src/.gitignore b/src/.gitignore
diff --git a/src/analyse/.gitignore b/src/analyse/.gitignore