Call cellranger versions from module env instead of containers #33

mjseignon · 2025-01-31T22:42:42Z

processes from module file will be edited to call cellranger versions from module instead of a singularity container

…ner call

…ckets

… module

mjseignon

Making the chunk for env module did not make a difference. I am going back to having the beforescript in the initial process chunk.

mjseignon added 13 commits January 31, 2025 17:22

Update cellranger_gex.nf add cellranger module call instead of contai…

3a754de

…ner call

Update cellranger_gex.nf back slash between tool and version

e5971ea

Update cellranger_gex.nf feed in only tool/version

41a31b5

Update elion.config use beforeScript to load module

d2ae753

Update cellranger_gex.nf beforescript in process to use module

56bb5f7

Update elion.config remove slurm as module

700bd04

Update cellranger_gex.nf remove beforescript from the process

7872133

Update cellranger_gex.nf record not being recognized remove curly bra…

350f614

…ckets

Update cellranger_gex.nf temporary explicit cr versions

1f291cb

Update cellranger_gex.nf special characters added to read record with…

b9bc5c1

… module

Update cellranger_gex.nf can it find cr v9

f63a849

Update elion.config new env chunk to load cr via module

4f56a48

Update cellranger_gex.nf call tool using record again

c15d9f8

mjseignon commented Feb 7, 2025

View reviewed changes

Update elion.config reverting to using a beforescript in a process chunk

9e1f790

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