This is a repository of scripts to run the long-read sequencing pipeline for ONT cDNA datasets, and are developed for a HPC system with the SLURM job scheduler.
For more information, please visit the wiki!
Please ensure to read the below documentation before trying to run the pipeline.
The following publications are based on analyses performed using scripts from this repository:
SK.Leung, A.R.Jeffries,...E.Hannon, J.Mill. Long-read transcript sequencing identifies differential isoform expression in the entorhinal cortex in a transgenic model of tau pathology. https://doi.org/10.1038/s41467-024-50486-8