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Fix missing channels in OpenEphys XML #347

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Fix missing channels in OpenEphys XML #347

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@weiglszonja weiglszonja commented May 13, 2025 •
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This PR introduces a standalone script (fix_openephys_xml_missing_channels.py) that:

  • Issues a warning when missing channels are detected in the XML (based on the CHANNELS tag)
  • Fills in missing channels in the CHANNELS, ELECTRODE_XPOS, and ELECTRODE_YPOS tags using inferred values
  • Optionally overwrites the original XML or saves a corrected copy (.fixed.xml).

See example for dataset in catalystneuro/schneider-lab-to-nwb#33

@weiglszonja weiglszonja marked this pull request as draft May 13, 2025 16:06
@weiglszonja weiglszonja marked this pull request as ready for review May 14, 2025 13:25
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@h-mayorquin @alejoe91 let me know what you think

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