TractParcellation

Automatic parcellation of white matter tractography using White matter analysis (WMA) method and O’Donnell Research Group (ORG) atlas .

Fig 1: Visual representation of brain tract parcellation.

Tutorial

The Tutorial for the Powpoint version can be found in releases.

• Start 3D Slicer
• Go to TractParcellation module
• Install WMA
• Download WM atlas (optional)
• Select input:
  • Select one of the three input methods
    • From Slicer: Select from Input Fiberbundle
    • From File: Choose file path from Input File
    • From Directory: Choose folder path from Input Folder
• Select output path from Output Folder
• Select the registration mode: affine or affine + nonlinear
• Decide whether to clear unnecessary intermediate results
• Select the number of threads involved in the computation
• Click Apply

User interface

Message Box

• Functionality: Displays the installation status of the WMA toolkit and WM atlas.

Installation Module

• Functionality: Provides an interface for automatically downloading the WMA toolkits and data sets.

IO Module

• Functionality: Provides selection for input and output paths and types.

Advanced Parameters Module

• Functionality:
  • Offers two registration methods.
  • Ability to automatically clear intermediate results.
  • Option to select the number of processors involved in the calculation.

License

The contents of this repository are released under a Slicer license.