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DOC: Add population average FreeSurfer parcellation info to README
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Add population average `FreeSurfer` parcellation information to
`README`: add short explanation on how it was computed and a link to the
corresponding `NIfTI` file hosted together with the rest of the data in
`zenodo`.
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jhlegarreta committed Jun 26, 2023
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Expand Up @@ -24,14 +24,18 @@ This Github repository provides an anatomically curated white matter atlas to en
- Drag and drop the selected mrml file onto 3D Slicer for visualization.
- Note: Use the Models module in 3D Slicer to visualize each individual fiber cluster, as described above.

### 1.3. Population mean T1/T2/b0 images
### 1.3. Population mean T1/T2/b0 images and FreeSurfer parcellation

For anatomical reference, we provide the atlas population mean T1/T2/b0 images. These images are computed by transforming the T1/T2/b0 images of the 100 HCP-atlas subjects (included for the atlas generation) into the atlas space.
For anatomical reference, we provide the atlas population MRI mean T1/T2/b0 and FreeSurfer parcellation images. The MRI
images are computed by transforming the T1/T2/b0 images of the 100 HCP-atlas subjects (included for the atlas
generation) into the atlas space. The FreeSurfer parcellation is computed using a majority vote strategy out of the
individual subjects' FreeSurfer parcellations in the atlas space.

- Download the following images:
- [100HCP-population-mean-T1.nii.gz](https://zenodo.org/record/2648292/files/100HCP-population-mean-T1.nii.gz?download=1), ~40MB
- [100HCP-population-mean-T2.nii.gz](https://zenodo.org/record/2648292/files/100HCP-population-mean-T2.nii.gz?download=1), ~40MB
- [100HCP-population-mean-b0.nii.gz](https://zenodo.org/record/2648292/files/100HCP-population-mean-b0.nii.gz?download=1), ~15MB
- [100HCP-population-mean-fs_wmparc.nii.gz](https://zenodo.org/record/8082481/files/100HCP-population-mean-wmparc.nii.gz?download=1), ~845kB
- Drag and drop one image (or multiple images) onto 3D Slicer for visualization.

## 2. Download the ORG Atlas for Subject-specific Tractography Parcellation
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