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37
multiome/1-cellranger_mapping/projects/experiment_3/fastq_paths_atac.csv
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,37 @@ | ||
| library_id,fastq_path,read,pair_id | ||
| 268946,/scratch/project/production/fastq/HFL23DRX2/1/fastq/HFL23DRX2_1_SI-NA-C2_1.fastq.gz,R1,P1 | ||
| 268946,/scratch/project/production/fastq/HFL23DRX2/1/fastq/HFL23DRX2_1_SI-NA-C2_UMI2.fastq.gz,R2,P1 | ||
| 268946,/scratch/project/production/fastq/HFL23DRX2/1/fastq/HFL23DRX2_1_SI-NA-C2_2.fastq.gz,R3,P1 | ||
| 268946,/scratch/project/production/fastq/HFL23DRX2/2/fastq/HFL23DRX2_2_SI-NA-C2_1.fastq.gz,R1,P2 | ||
| 268946,/scratch/project/production/fastq/HFL23DRX2/2/fastq/HFL23DRX2_2_SI-NA-C2_UMI2.fastq.gz,R2,P2 | ||
| 268946,/scratch/project/production/fastq/HFL23DRX2/2/fastq/HFL23DRX2_2_SI-NA-C2_2.fastq.gz,R3,P2 | ||
| 268947,/scratch/project/production/fastq/HFL23DRX2/1/fastq/HFL23DRX2_1_SI-NA-C3_1.fastq.gz,R1,P3 | ||
| 268947,/scratch/project/production/fastq/HFL23DRX2/1/fastq/HFL23DRX2_1_SI-NA-C3_UMI2.fastq.gz,R2,P3 | ||
| 268947,/scratch/project/production/fastq/HFL23DRX2/1/fastq/HFL23DRX2_1_SI-NA-C3_2.fastq.gz,R3,P3 | ||
| 268947,/scratch/project/production/fastq/HFL23DRX2/2/fastq/HFL23DRX2_2_SI-NA-C3_1.fastq.gz,R1,P4 | ||
| 268947,/scratch/project/production/fastq/HFL23DRX2/2/fastq/HFL23DRX2_2_SI-NA-C3_UMI2.fastq.gz,R2,P4 | ||
| 268947,/scratch/project/production/fastq/HFL23DRX2/2/fastq/HFL23DRX2_2_SI-NA-C3_2.fastq.gz,R3,P4 | ||
| 268948,/scratch/project/production/fastq/HFL23DRX2/1/fastq/HFL23DRX2_1_SI-NA-C4_1.fastq.gz,R1,P5 | ||
| 268948,/scratch/project/production/fastq/HFL23DRX2/1/fastq/HFL23DRX2_1_SI-NA-C4_UMI2.fastq.gz,R2,P5 | ||
| 268948,/scratch/project/production/fastq/HFL23DRX2/1/fastq/HFL23DRX2_1_SI-NA-C4_2.fastq.gz,R3,P5 | ||
| 268948,/scratch/project/production/fastq/HFL23DRX2/2/fastq/HFL23DRX2_2_SI-NA-C4_1.fastq.gz,R1,P6 | ||
| 268948,/scratch/project/production/fastq/HFL23DRX2/2/fastq/HFL23DRX2_2_SI-NA-C4_UMI2.fastq.gz,R2,P6 | ||
| 268948,/scratch/project/production/fastq/HFL23DRX2/2/fastq/HFL23DRX2_2_SI-NA-C4_2.fastq.gz,R3,P6 | ||
| 268948,/scratch/project/production/fastq/HFL5VDRX2/1/fastq/HFL5VDRX2_1_SI-NA-C4_1.fastq.gz,R1,P7 | ||
| 268948,/scratch/project/production/fastq/HFL5VDRX2/1/fastq/HFL5VDRX2_1_SI-NA-C4_UMI2.fastq.gz,R2,P7 | ||
| 268948,/scratch/project/production/fastq/HFL5VDRX2/1/fastq/HFL5VDRX2_1_SI-NA-C4_2.fastq.gz,R3,P7 | ||
| 268948,/scratch/project/production/fastq/HFL5VDRX2/2/fastq/HFL5VDRX2_2_SI-NA-C4_1.fastq.gz,R1,P8 | ||
| 268948,/scratch/project/production/fastq/HFL5VDRX2/2/fastq/HFL5VDRX2_2_SI-NA-C4_UMI2.fastq.gz,R2,P8 | ||
| 268948,/scratch/project/production/fastq/HFL5VDRX2/2/fastq/HFL5VDRX2_2_SI-NA-C4_2.fastq.gz,R3,P8 | ||
| 268949,/scratch/project/production/fastq/HFL23DRX2/1/fastq/HFL23DRX2_1_SI-NA-C5_1.fastq.gz,R1,P9 | ||
| 268949,/scratch/project/production/fastq/HFL23DRX2/1/fastq/HFL23DRX2_1_SI-NA-C5_UMI2.fastq.gz,R2,P9 | ||
| 268949,/scratch/project/production/fastq/HFL23DRX2/1/fastq/HFL23DRX2_1_SI-NA-C5_2.fastq.gz,R3,P9 | ||
| 268949,/scratch/project/production/fastq/HFL23DRX2/2/fastq/HFL23DRX2_2_SI-NA-C5_1.fastq.gz,R1,P10 | ||
| 268949,/scratch/project/production/fastq/HFL23DRX2/2/fastq/HFL23DRX2_2_SI-NA-C5_UMI2.fastq.gz,R2,P10 | ||
| 268949,/scratch/project/production/fastq/HFL23DRX2/2/fastq/HFL23DRX2_2_SI-NA-C5_2.fastq.gz,R3,P10 | ||
| 268949,/scratch/project/production/fastq/HJYYFDRX2/1/fastq/HJYYFDRX2_1_SI-NA-C5_1.fastq.gz,R1,P11 | ||
| 268949,/scratch/project/production/fastq/HJYYFDRX2/1/fastq/HJYYFDRX2_1_SI-NA-C5_UMI2.fastq.gz,R2,P11 | ||
| 268949,/scratch/project/production/fastq/HJYYFDRX2/1/fastq/HJYYFDRX2_1_SI-NA-C5_2.fastq.gz,R3,P11 | ||
| 268949,/scratch/project/production/fastq/HJYYFDRX2/2/fastq/HJYYFDRX2_2_SI-NA-C5_1.fastq.gz,R1,P12 | ||
| 268949,/scratch/project/production/fastq/HJYYFDRX2/2/fastq/HJYYFDRX2_2_SI-NA-C5_UMI2.fastq.gz,R2,P12 | ||
| 268949,/scratch/project/production/fastq/HJYYFDRX2/2/fastq/HJYYFDRX2_2_SI-NA-C5_2.fastq.gz,R3,P12 |
17 changes: 17 additions & 0 deletions
17
multiome/1-cellranger_mapping/projects/experiment_3/fastq_paths_rna.csv
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,17 @@ | ||
| library_id,fastq_path,read,pair_id | ||
| 269550,/scratch/project/production/fastq/HCNHVDMXY/1/fastq/HCNHVDMXY_1_SI-TT-D8_1.fastq.gz,R1,P1 | ||
| 269550,/scratch/project/production/fastq/HCNHVDMXY/1/fastq/HCNHVDMXY_1_SI-TT-D8_2.fastq.gz,R2,P1 | ||
| 269550,/scratch/project/production/fastq/HCNHVDMXY/2/fastq/HCNHVDMXY_2_SI-TT-D8_1.fastq.gz,R1,P2 | ||
| 269550,/scratch/project/production/fastq/HCNHVDMXY/2/fastq/HCNHVDMXY_2_SI-TT-D8_2.fastq.gz,R2,P2 | ||
| 269551,/scratch/project/production/fastq/HCNHVDMXY/1/fastq/HCNHVDMXY_1_SI-TT-D9_1.fastq.gz,R1,P3 | ||
| 269551,/scratch/project/production/fastq/HCNHVDMXY/1/fastq/HCNHVDMXY_1_SI-TT-D9_2.fastq.gz,R2,P3 | ||
| 269551,/scratch/project/production/fastq/HCNHVDMXY/2/fastq/HCNHVDMXY_2_SI-TT-D9_1.fastq.gz,R1,P4 | ||
| 269551,/scratch/project/production/fastq/HCNHVDMXY/2/fastq/HCNHVDMXY_2_SI-TT-D9_2.fastq.gz,R2,P4 | ||
| 269552,/scratch/project/production/fastq/HCNHVDMXY/1/fastq/HCNHVDMXY_1_SI-TT-D10_1.fastq.gz,R1,P5 | ||
| 269552,/scratch/project/production/fastq/HCNHVDMXY/1/fastq/HCNHVDMXY_1_SI-TT-D10_2.fastq.gz,R2,P5 | ||
| 269552,/scratch/project/production/fastq/HCNHVDMXY/2/fastq/HCNHVDMXY_2_SI-TT-D10_1.fastq.gz,R1,P6 | ||
| 269552,/scratch/project/production/fastq/HCNHVDMXY/2/fastq/HCNHVDMXY_2_SI-TT-D10_2.fastq.gz,R2,P6 | ||
| 269553,/scratch/project/production/fastq/HCNHVDMXY/1/fastq/HCNHVDMXY_1_SI-TT-D11_1.fastq.gz,R1,P7 | ||
| 269553,/scratch/project/production/fastq/HCNHVDMXY/1/fastq/HCNHVDMXY_1_SI-TT-D11_2.fastq.gz,R2,P7 | ||
| 269553,/scratch/project/production/fastq/HCNHVDMXY/2/fastq/HCNHVDMXY_2_SI-TT-D11_1.fastq.gz,R1,P8 | ||
| 269553,/scratch/project/production/fastq/HCNHVDMXY/2/fastq/HCNHVDMXY_2_SI-TT-D11_2.fastq.gz,R2,P8 |
9 changes: 9 additions & 0 deletions
9
multiome/1-cellranger_mapping/projects/experiment_3/info_BCLLATLAS_133.txt
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,9 @@ | ||
| project subproject id SampleName sample library SubprojectId material aliquot flowcell lane index libraryPassFail LanePassFail libApplication Kit Organism Sex pedigree cohort GenomeRef SplitIndexcohort SubprojectCov motherId fatherId library__gbs_index__multiplex_index_name readLength sampleStatus mappingVersion mapperName mapperVersion | ||
| BCLLATLAS BCLLATLAS_133 269550 BCLL_25_T_GEX_1 AZ3020 AZ3020 8181 Cell suspension None HCNHVDMXY 1 SI-TT-D8 pass pass Single cell RNA-seq None Homo sapiens 0 None None None split 200.000 None None None 1 * 28 +10+10+90 Unaffected None None None | ||
| BCLLATLAS BCLLATLAS_133 269550 BCLL_25_T_GEX_1 AZ3020 AZ3020 8181 Cell suspension None HCNHVDMXY 2 SI-TT-D8 pass pass Single cell RNA-seq None Homo sapiens 0 None None None split 200.000 None None None 1 * 28 +10+10+90 Unaffected None None None | ||
| BCLLATLAS BCLLATLAS_133 269551 BCLL_25_T_GEX_2 AZ3021 AZ3021 8181 Cell suspension None HCNHVDMXY 1 SI-TT-D9 pass pass Single cell RNA-seq None Homo sapiens 0 None None None split 200.000 None None None 1 * 28 +10+10+90 Unaffected None None None | ||
| BCLLATLAS BCLLATLAS_133 269551 BCLL_25_T_GEX_2 AZ3021 AZ3021 8181 Cell suspension None HCNHVDMXY 2 SI-TT-D9 pass pass Single cell RNA-seq None Homo sapiens 0 None None None split 200.000 None None None 1 * 28 +10+10+90 Unaffected None None None | ||
| BCLLATLAS BCLLATLAS_133 269552 BCLL_26_T_GEX_1 AZ3022 AZ3022 8181 Cell suspension None HCNHVDMXY 1 SI-TT-D10 pass pass Single cell RNA-seq None Homo sapiens 0 None None None split 200.000 None None None 1 * 28 +10+10+90 Unaffected None None None | ||
| BCLLATLAS BCLLATLAS_133 269552 BCLL_26_T_GEX_1 AZ3022 AZ3022 8181 Cell suspension None HCNHVDMXY 2 SI-TT-D10 pass pass Single cell RNA-seq None Homo sapiens 0 None None None split 200.000 None None None 1 * 28 +10+10+90 Unaffected None None None | ||
| BCLLATLAS BCLLATLAS_133 269553 BCLL_26_T_GEX_2 AZ3023 AZ3023 8181 Cell suspension None HCNHVDMXY 1 SI-TT-D11 pass pass Single cell RNA-seq None Homo sapiens 0 None None None split 200.000 None None None 1 * 28 +10+10+90 Unaffected None None None | ||
| BCLLATLAS BCLLATLAS_133 269553 BCLL_26_T_GEX_2 AZ3023 AZ3023 8181 Cell suspension None HCNHVDMXY 2 SI-TT-D11 pass pass Single cell RNA-seq None Homo sapiens 0 None None None split 200.000 None None None 1 * 28 +10+10+90 Unaffected None None None |
13 changes: 13 additions & 0 deletions
13
multiome/1-cellranger_mapping/projects/experiment_3/info_BCLLATLAS_134.txt
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,13 @@ | ||
| project subproject id SampleName sample library SubprojectId material aliquot flowcell lane index libraryPassFail LanePassFail libApplication Kit Organism Sex pedigree cohort GenomeRef SplitIndexcohort SubprojectCov motherId fatherId library__gbs_index__multiplex_index_name readLength sampleStatus mappingVersion mapperName mapperVersion | ||
| BCLLATLAS BCLLATLAS_134 268946 BCLL_25_T_ATAC_1 AZ3024 AZ3024 8182 Cell suspension None HFL23DRX2 1 SI-NA-C2 pass pass Single cell ATAC-seq None Homo sapiens 0 None None None split 200.000 None None None 2 * 50 +8+24 Unaffected None None None | ||
| BCLLATLAS BCLLATLAS_134 268946 BCLL_25_T_ATAC_1 AZ3024 AZ3024 8182 Cell suspension None HFL23DRX2 2 SI-NA-C2 pass pass Single cell ATAC-seq None Homo sapiens 0 None None None split 200.000 None None None 2 * 50 +8+24 Unaffected None None None | ||
| BCLLATLAS BCLLATLAS_134 268947 BCLL_25_T_ATAC_2 AZ3025 AZ3025 8182 Cell suspension None HFL23DRX2 1 SI-NA-C3 pass pass Single cell ATAC-seq None Homo sapiens 0 None None None split 200.000 None None None 2 * 50 +8+24 Unaffected None None None | ||
| BCLLATLAS BCLLATLAS_134 268947 BCLL_25_T_ATAC_2 AZ3025 AZ3025 8182 Cell suspension None HFL23DRX2 2 SI-NA-C3 pass pass Single cell ATAC-seq None Homo sapiens 0 None None None split 200.000 None None None 2 * 50 +8+24 Unaffected None None None | ||
| BCLLATLAS BCLLATLAS_134 268948 BCLL_26_T_ATAC_1 AZ3026 AZ3026 8182 Cell suspension None HFL23DRX2 1 SI-NA-C4 pass pass Single cell ATAC-seq None Homo sapiens 0 None None None split 200.000 None None None 2 * 50 +8+24 Unaffected None None None | ||
| BCLLATLAS BCLLATLAS_134 268948 BCLL_26_T_ATAC_1 AZ3026 AZ3026 8182 Cell suspension None HFL23DRX2 2 SI-NA-C4 pass pass Single cell ATAC-seq None Homo sapiens 0 None None None split 200.000 None None None 2 * 50 +8+24 Unaffected None None None | ||
| BCLLATLAS BCLLATLAS_134 268948 BCLL_26_T_ATAC_1 AZ3026 AZ3026 8182 Cell suspension None HFL5VDRX2 1 SI-NA-C4 pass pass Single cell ATAC-seq None Homo sapiens 0 None None None split 200.000 None None None 2 * 50 +8+24 Unaffected None None None | ||
| BCLLATLAS BCLLATLAS_134 268948 BCLL_26_T_ATAC_1 AZ3026 AZ3026 8182 Cell suspension None HFL5VDRX2 2 SI-NA-C4 pass pass Single cell ATAC-seq None Homo sapiens 0 None None None split 200.000 None None None 2 * 50 +8+24 Unaffected None None None | ||
| BCLLATLAS BCLLATLAS_134 268949 BCLL_26_T_ATAC_2 AZ3027 AZ3027 8182 Cell suspension None HFL23DRX2 1 SI-NA-C5 pass pass Single cell ATAC-seq None Homo sapiens 0 None None None split 200.000 None None None 2 * 50 +8+24 Unaffected None None None | ||
| BCLLATLAS BCLLATLAS_134 268949 BCLL_26_T_ATAC_2 AZ3027 AZ3027 8182 Cell suspension None HFL23DRX2 2 SI-NA-C5 pass pass Single cell ATAC-seq None Homo sapiens 0 None None None split 200.000 None None None 2 * 50 +8+24 Unaffected None None None | ||
| BCLLATLAS BCLLATLAS_134 268949 BCLL_26_T_ATAC_2 AZ3027 AZ3027 8182 Cell suspension None HJYYFDRX2 1 SI-NA-C5 pass pass Single cell ATAC-seq None Homo sapiens 0 None None None split 200.000 None None None 2 * 50 +8+24 Unaffected None None None | ||
| BCLLATLAS BCLLATLAS_134 268949 BCLL_26_T_ATAC_2 AZ3027 AZ3027 8182 Cell suspension None HJYYFDRX2 2 SI-NA-C5 pass pass Single cell ATAC-seq None Homo sapiens 0 None None None split 200.000 None None None 2 * 50 +8+24 Unaffected None None None |