QBS103 Project

This repository contains the code and data for the QBS103 project. The project includes analysis and visualization of gene expression data.

Contents

• main.Rmd: R Markdown file with the analysis.
• previous_sub\: A folder that contains the pdf and Rmd files for submission 1 and 2.
• QBS103.Rproj: RStudio project file.
• dataset/QBS103_GSE157103_genes.csv: CSV file with gene data.
• dataset/QBS103_GSE157103_series_matrix.csv: CSV file with patients meta data.
• LICENSE: License for the project.
• README.md: This file.

Analysis

The analysis is performed using R and includes the following visualizations:

Histogram of Gene Expression

Boxplot of Gene Expression by Sex and Disease Status

Scatter Plot of Gene Expression vs. Age

heatmap of 15 selected genes

ridge plot of Gene Expression vs. Sex and Disease Status

Usage

To reproduce the analysis, open the QBS103.Rproj file in RStudio and knit the main.Rmd file.

License

This project is licensed under the MIT License. See the LICENSE file for details.