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A workshop covering common data wrangling & manipulation tasks in R

R 1 Updated Jul 3, 2019

Tools for constructing and plotting Markov Random Fields in R for graphical data

R 16 4 Updated Dec 13, 2023

Generates and evaluates D, I, A, Alias, E, T, G, and custom optimal designs. Supports generation and evaluation of mixture and split/split-split/N-split plot designs. Includes parametric and Monte …

R 119 15 Updated Apr 7, 2025

R Package for 2D and 3D mapping and data visualization

R 2,099 216 Updated Jan 29, 2025
Jupyter Notebook 2 2 Updated Mar 25, 2024

Tidy methods for Bayesian treatment effect models

R 16 2 Updated Jan 11, 2025

Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

C++ 89 18 Updated Nov 25, 2024

Aligns short reads using dynamic seed size with strobemers

C++ 167 20 Updated Apr 11, 2025

Implementation of GP-BART algorithm.

C++ 16 4 Updated Dec 28, 2023

brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan

R 1,313 193 Updated Apr 12, 2025
C++ 77 11 Updated Apr 8, 2025

an R package for structural equation modeling and more

R 458 107 Updated Apr 17, 2025

mixed sample analysis

Python 4 Updated Nov 30, 2023

Alignment-free Phylogenetic Placement using filtered SPAced word Matches

C++ 11 1 Updated Jul 19, 2023

πŸ“œ πŸŽ‰ Automated reporting of objects in R

R 703 70 Updated Apr 6, 2025

Accelerated Bayesian inference of population size history from whole genome data.

Python 12 Updated Apr 3, 2025
Shell 10 7 Updated Oct 19, 2023

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

Python 308 86 Updated Jul 7, 2023

A fully compliant RISC-V computer made inside the game Terraria

Rust 3,623 47 Updated Mar 24, 2025

Automated and distributed population genetic model inference from allele frequency spectra

Python 16 7 Updated Apr 6, 2025

Unsupervised time series anomaly detection library

Python 1,107 172 Updated Apr 21, 2025
Python 16 8 Updated Apr 14, 2021

πŸŽ„ spruceup

Python 24 2 Updated Aug 20, 2024

Assembly of Phylogenomic Datasets from High-Throughput Sequencing data

Python 25 6 Updated Apr 16, 2025

diCal2 infers complex demographic histories from whole-genome sequencing data

Java 7 Updated Jul 15, 2022
Jupyter Notebook 61 3 Updated Jan 2, 2025

Lightweight python library for predicting the difficulty of alignments in phylogenetics

Python 17 Updated Mar 31, 2025

Recovering genes from targeted sequence capture data

Python 121 44 Updated Jan 8, 2025
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