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FFS Coarse Graining option #250

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Add Coarse Graining FFS (https://doi.org/10.1073/pnas.1509267112) with the option of different timesteps for initial flow and the window sampling functions.

Add the possibility for coarse graining ffs https://doi.org/10.1073/pnas.1509267112
check correct sampling time for initial flow
update to new CG ffs
modify ffs section
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Please run ./trunk fmt on this branch to make the error go away.

Add warning for multiple windows crossing for same sampling time
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