A Nextflow pipeline for building Rfam snoRNA families
wget https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_6_x/ViennaRNA-2.6.4.tar.gz tar -xvzf ViennaRNA-2.6.4.tar.gz cd ViennaRNA-2.6.4 ./configure --prefix=$HOME/vrna --enable-pkgconfig make make install export PKG_CONFIG_PATH=$HOME/vrna/lib/pkgconfig:$PKG_CONFIG_PATH // add to nextflow.config
Download .tar.gz from https://github.com/s-will/LocARNA/releases tar xzf locarna-xxx.tar.gz cd locarna-xxx ./configure --prefix=$HOME/locarna --with-vrna=$HOME/vrna make make install export PATH=/Users/ksong/locarna/bin:$PATH // add to nextflow.config