setup basic structure

.gitignore

@@ -1,3 +1,5 @@
+.DS_Store
+
 # Byte-compiled / optimized / DLL files
 __pycache__/
 *.py[cod]

cookiecutter.json

@@ -1,7 +1,7 @@
 {
-	"protocol_name": "my-reproschema-protocol",
-	"__protocol_slug":  "{{ cookiecutter.protocol_name|lower()|replace(' ', '_')|replace('-', '_') }}",
-	"github_org": "my-org",
+    "protocol_name": "my-reproschema-protocol",
+    "__protocol_slug":  "{{ cookiecutter.protocol_name|lower()|replace(' ', '_')|replace('-', '_') }}",
+    "github_org": "my-org",
     "__source_path": "src/{{cookiecutter.__protocol_slug}}/schema/{{cookiecutter.__project_slug}}.yaml",
     "protocol_description": "This is the protocol description.",
     "full_name": "My Name",

{{cookiecutter.protocol_name}}/README.md

@@ -0,0 +1,29 @@
+# {{cookiecutter.protocol_name}}
+
+{{cookiecutter.protocol_description}}
+
+## Website
+
+[https://{{cookiecutter.github_org}}.github.io/{{cookiecutter.protocol_name}}](https://{{cookiecutter.github_org}}.github.io/{{cookiecutter.protocol_name}})
+
+## Repository Structure
+
+* [{{cookiecutter.__protocol_slug}}/]({{cookiecutter.__protocol_slug}}/) - Contains protocol files
+  * [schema]({{cookiecutter.__protocol_slug}}/{{cookiecutter.__protocol_slug}}_schema) - Reproschema protocol schema (edit this file)
+  * [README.md]({{cookiecutter.__protocol_slug}}/README.md) - Welcome page of the protocol (edit this file)
+* [activities/](activities/) - Contains activity files (edit these files)
+* [ui-changes/src/config.js](ui-changes/src/config.js) - Source file for UI setup (edit this file)
+
+## Developer Documentation
+
+<details>
+Use the `make` command to generate protocol artefacts:
+
+* `make all`: make everything
+* `make deploy`: deploys site
+</details>
+
+## Credits
+
+This protocol was made with
+[reproschema-protocol-cookiecutter](https://github.com/ReproNim/reproschema-protocol-cookiecutter).

{{cookiecutter.protocol_name}}/ui-changes/src/config.js

@@ -0,0 +1,8 @@
+module.exports = {
+  /* eslint-disable */
+  githubSrc: 'https://raw.githubusercontent.com/{{cookiecutter.github_org}}/{{cookiecutter.protocol_name}}/main/{{cookiecutter.__protocol_slug}}/{{cookiecutter.__protocol_slug}}_schema',
+  banner: {{cookiecutter.protocol_description}},
+  startButton: 'Join',
+  assetsPublicPath: '/{{cookiecutter.__protocol_slug}}/',
+  backendServer: null
+};