Add md5 and basename file parsers #23
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troycomi
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Closes #8 I updated the config code to use default resources from the toml instead of the hard coded values. The configuration toml is now documented in the readme and when the user omits the toml option they get an error telling them it's required and to check the readme for an example. Need to still work on categorical inputs that are paths (handling, warning, etc). This is good to merge now though, can add the rest later. |
| # can be overwritten by subsequent jobs | ||
| # if not set, will use 1000 for default memory and 60 for default runtime | ||
| default_mem = 2000 | ||
| default_time = 70 |
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| default_time = 70 | |
| default_time = 60 |
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Good catch, but I had this as 70 to show it could be different than the defaults when nothing is provided (1000 and 60).
README.md
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| # /^>/ {next} | ||
| # {seq = seq + length($0)} | ||
| # END {if (seq) print seq} | ||
| ''' |
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I think you forgot the opening of these.
Co-authored-by: Ioannis Paraskevakos <[email protected]>
Check if you need to strip quotations from filenames for categoricals and files
Detect if categorical has file (hd5) separators, warn user and escape to store as categorical