Bioinformatic toolkits of RNA-seq data.
SiPAS-tools integrates a collection of toolkits facilitating research analysis on RNA-seq data. It is a Java-based program, combines efficiency and flexibility to realize high-performance computation of various of functions for the following transcriptomics analysis. ##Apps And User Manual SiPAS-tools is designed to simplify its usage for the convenience of end users. It has a list of applications (Apps). Each app has a parameter file or some parameters. There are the apps of SiPAS-tools:
Parsing samples are coded to barcodes.Getting bam file using STAR.Validating the RNA samples using genotype data.Gene quantification of samples.Getting count table of samples.